PDIVAS: Pathogenicity predictor for deep-intronic variants causing aberrant splicing

R Kurosawa, K Iida, M Ajiro, T Awaya, M Yamada… - BMC genomics, 2023 - Springer
Background Deep-intronic variants that alter RNA splicing were ineffectively evaluated in the
search for the cause of genetic diseases. Determination of such pathogenic variants from a …

Deciphering the impact of coding and non-coding SCN1A gene variants on RNA splicing

P Sparber, M Sharova, K Davydenko, D Pyankov… - Brain, 2024 - academic.oup.com
Variants that disrupt normal pre-mRNA splicing are increasingly being recognized as a
major cause of monogenic disorders. The SCN1A gene, a key epilepsy gene that is linked to …

Evaluation in Monogenic Diabetes of the Impact of GCK, HNF1A, and HNF4A Variants on Splicing through the Combined Use of In Silico Tools and Minigene …

D Bouvet, A Blondel, JM de Sainte Agathe… - Human …, 2023 - Wiley Online Library
Variants in GCK, HNF1A, and HNF4A genes are the three main causes of monogenic
diabetes. Determining the molecular etiology is essential for patients with monogenic …

Predicting the impact of rare variants on RNA splicing in CAGI6

J Lord, CJ Oquendo, HA Wai, AGL Douglas… - Human Genetics, 2024 - Springer
Variants which disrupt splicing are a frequent cause of rare disease that have been under-
ascertained clinically. Accurate and efficient methods to predict a variant's impact on splicing …

Combining full-length gene assay and SpliceAI to interpret the splicing impact of all possible SPINK1 coding variants

H Wu, JH Lin, XY Tang, G Marenne, WB Zou, S Schutz… - Human Genomics, 2024 - Springer
Abstract Background Single-nucleotide variants (SNVs) within gene coding sequences can
significantly impact pre-mRNA splicing, bearing profound implications for pathogenic …

RNA Panel Sequencing Is an Effective Tool to Help Classify Splice Variants for Clinical Oncogenetic Diagnosis

M Privat, F Ponelle-Chachuat, S Viala… - Human …, 2024 - Wiley Online Library
Routine gene panel analysis identifies pathogenic variants in clinically relevant genes.
However, variants of unknown significance (VUSs) are commonly observed, many of which …

Genetic Landscape of SH3TC2 variants in Russian patients with Charcot–Marie–Tooth disease

O Shchagina, A Murtazina, P Chausova… - Frontiers in …, 2024 - frontiersin.org
Introduction: Charcot–Marie–Tooth disease type 4C (CMT4C) OMIM# 601596 stands out as
one of the most prevalent forms of recessive motor sensory neuropathy worldwide. This …

Splicing analysis of 24 potential spliceogenic variants in MMR genes and clinical interpretation based on refined ACMG/AMP criteria

A Bouras, C Lefol, E Ruano… - Human Molecular …, 2024 - academic.oup.com
Lynch syndrome (LS) is a common hereditary cancer syndrome caused by heterozygous
germline pathogenic variants in DNA mismatch repair (MMR) genes. Splicing defect …

[HTML][HTML] The “extreme phenotype approach” applied to male breast cancer allows the identification of rare variants of ATR as potential breast cancer susceptibility …

M Chevarin, D Alcantara, J Albuisson… - Oncotarget, 2023 - ncbi.nlm.nih.gov
In oncogenetics, some patients could be considered as “extreme phenotypes”, such as
those with very early onset presentation or multiple primary malignancies, unusually high …

Comprehensive genomic filtering algorithm to expose the cause of skewed X chromosome inactivation. The proof of concept in female haemophilia expression

BM Ziegler, MM Abelleyro, VD Marchione… - Journal of Medical …, 2024 - jmg.bmj.com
Background Exploring the expression of X linked disorders like haemophilia A (HA) in
females involves understanding the balance achieved through X chromosome inactivation …