[HTML][HTML] Transcriptional heterogeneity in naive and primed human pluripotent stem cells at single-cell resolution

T Messmer, F von Meyenn, A Savino, F Santos… - Cell reports, 2019 - cell.com
Conventional human embryonic stem cells are considered to be primed pluripotent but can
be induced to enter a naive state. However, the transcriptional features associated with …

[HTML][HTML] Progress and challenges in large-scale expansion of human pluripotent stem cells

C Kropp, D Massai, R Zweigerdt - Process Biochemistry, 2017 - Elsevier
The constant supply of high cell numbers generated by defined, robust, and economically
viable culture processes is indispensable for the envisioned application of human …

Comprehensive cell surface protein profiling identifies specific markers of human naive and primed pluripotent states

AJ Collier, SP Panula, JP Schell, P Chovanec… - Cell stem cell, 2017 - cell.com
Human pluripotent stem cells (PSCs) exist in naive and primed states and provide important
models to investigate the earliest stages of human development. Naive cells can be …

scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets

Y Lin, S Ghazanfar, KYX Wang… - Proceedings of the …, 2019 - National Acad Sciences
Concerted examination of multiple collections of single-cell RNA sequencing (RNA-seq)
data promises further biological insights that cannot be uncovered with individual datasets …

Trophoblast lineage specification, differentiation and their regulation by oxygen tension

CW Chang, AK Wakeland… - Journal of …, 2018 - joe.bioscientifica.com
Development of the early embryo takes place under low oxygen tension. Under such
conditions, the embryo implants and the trophectoderm, the outer layer of blastocyst …

[HTML][HTML] Derivation of functional trophoblast stem cells from primed human pluripotent stem cells

F Soncin, R Morey, T Bui, DF Requena, VC Cheung… - Stem cell reports, 2022 - cell.com
Trophoblast stem cells (TSCs) have recently been derived from human embryos and early-
first-trimester placenta; however, aside from ethical challenges, the unknown disease …

SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation

R Zheng, M Li, Z Liang, FX Wu, Y Pan, J Wang - Bioinformatics, 2019 - academic.oup.com
Motivation The development of single-cell RNA-sequencing (scRNA-seq) provides a new
perspective to study biological problems at the single-cell level. One of the key issues in …

Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming

X Liu, CM Nefzger, FJ Rossello, J Chen, AS Knaupp… - Nature …, 2017 - nature.com
Recent reports on the characteristics of naive human pluripotent stem cells (hPSCs)
obtained using independent methods differ. Naive hPSCs have been mainly derived by …

Naïve human pluripotent stem cells respond to Wnt, Nodal and LIF signalling to produce expandable naïve extra-embryonic endoderm

M Linneberg-Agerholm, YF Wong… - …, 2019 - journals.biologists.com
Embryonic stem cells (ESCs) exist in at least two states that transcriptionally resemble
different stages of embryonic development. Naïve ESCs resemble peri-implantation stages …

[HTML][HTML] The exploration of pluripotency space: Charting cell state transitions in peri-implantation development

MF Pera, J Rossant - Cell Stem Cell, 2021 - cell.com
Pluripotent cells in the mammalian embryo undergo state transitions marked by changes in
patterns of gene expression and developmental potential as they progress from pre …