Direct identification of complex glycans via a highly sensitive engineered nanopore

G Yao, Y Tian, W Ke, J Fang, S Ma, T Li… - Journal of the …, 2024 - ACS Publications
The crucial roles that glycans play in biological systems are determined by their structures.
However, the analysis of glycan structures still has numerous bottlenecks due to their …

Exploring electron transfer: Bioinspired, biomimetics, and bioelectrochemical systems for sustainable energy and Value-Added compound synthesis

GC Sedenho, RNP Colombo, RM Iost… - Applied Physics …, 2024 - pubs.aip.org
Electron transfer (ET) is a fundamental process that underlies various phenomena in
physics, chemistry, and biology. Understanding ET mechanisms is crucial for developing …

[HTML][HTML] Comparison of de novo assembly using long-read shotgun metagenomic sequencing of viruses in fecal and serum samples from marine mammals

K Vigil, TG Aw - Frontiers in Microbiology, 2023 - frontiersin.org
Introduction Viral diseases of marine mammals are difficult to study, and this has led to a
limited knowledge on emerging known and unknown viruses which are ongoing threats to …

[HTML][HTML] Long-Read Nanopore Sequencing of RPGR ORF15 is Enhanced Following DNase I Treatment of MinION Flow Cells

S Yahya, CM Watson, I Carr, M McKibbin… - Molecular Diagnosis & …, 2023 - Springer
Introduction RPGR ORF15 is an exon present almost exclusively in the retinal transcript of
RPGR. It is purine-rich, repetitive and notoriously hard to sequence, but is a hotspot for …

NanoDeep: a deep learning framework for nanopore adaptive sampling on microbial sequencing

Y Lin, Y Zhang, H Sun, H Jiang, X Zhao… - Briefings in …, 2024 - academic.oup.com
Nanopore sequencers can enrich or deplete the targeted DNA molecules in a library by
reversing the voltage across individual nanopores. However, it requires substantial …

[PDF][PDF] Клинические исследования микробиома человека. Стратегии применения методов и трансляция результатов в клиническую практику

СИ Кошечкин, ВЕ Одинцова, АВ Карасев… - PEDIATRICS, 2024 - omnidoctor.ru
Аннотация Анализируются актуальные омиксные методы, которые имеют важное
значение для научных исследований. Их применение позволяет изучить механизмы …

[HTML][HTML] OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics Classifier

S Marini, A Barquero, AA Wadhwani, J Bian, J Ruiz… - bioRxiv, 2024 - ncbi.nlm.nih.gov
Portable genomic sequencers such as Oxford Nanopore's MinION enable real-time
applications in both clinical and environmental health, eg, detection of bacterial outbreaks …

Inactivation of Three Stacked Genes of Cytosolic Peroxiredoxins by Genome Editing

L Vogelsang, KJ Dietz - ROS Signaling in Plants: Methods and Protocols, 2024 - Springer
A set of peroxidases detoxifies H2O2 and mediates H2O2-dependent signal propagation.
The peroxidases include peroxiredoxins, glutathione peroxidases, ascorbate peroxidases …

Long-Read MDM4 Isoform Sequencing Reveals Aberrant Isoform Landscape in Metastatic Melanomas

NR Patrick - 2024 - rave.ohiolink.edu
The changes in splicing of MDM4 in human melanomagenesis are critical to p53 activity and
represent potential therapeutic targets. Genomic characteristics of melanoma and precursor …

Mixed Strain Identification of Porcine Reproductive and Respiratory Syndrome Virus in Multiplexed Samples using Nanopore Sequencing

MP Buman Ruiz Diaz - 2024 - vtechworks.lib.vt.edu
For over thirty years, Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) has
been a major contributor to morbidity and mortality in the commercial swine industry across …