Molecular atlas of the adult mouse brain

C Ortiz, JF Navarro, A Jurek, A Märtin, J Lundeberg… - Science …, 2020 - science.org
Brain maps are essential for integrating information and interpreting the structure-function
relationship of circuits and behavior. We aimed to generate a systematic classification of the …

The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing

E Lein, LE Borm, S Linnarsson - Science, 2017 - science.org
The stereotyped spatial architecture of the brain is both beautiful and fundamentally related
to its function, extending from gross morphology to individual neuron types, where soma …

OpenML: networked science in machine learning

J Vanschoren, JN Van Rijn, B Bischl… - ACM SIGKDD Explorations …, 2014 - dl.acm.org
Many sciences have made significant breakthroughs by adopting online tools that help
organize, structure and mine information that is too detailed to be printed in journals. In this …

Anterior hippocampus: the anatomy of perception, imagination and episodic memory

P Zeidman, EA Maguire - Nature Reviews Neuroscience, 2016 - nature.com
The brain creates a model of the world around us. We can use this representation to
perceive and comprehend what we see at any given moment, but also to vividly re …

Bridging the gap between connectome and transcriptome

A Fornito, A Arnatkevičiūtė, BD Fulcher - Trends in cognitive sciences, 2019 - cell.com
The recent construction of brain-wide gene expression atlases, which measure the
transcriptional activity of thousands of genes in multiple anatomical locations, has made it …

A community-based transcriptomics classification and nomenclature of neocortical cell types

R Yuste, M Hawrylycz, N Aalling, A Aguilar-Valles… - Nature …, 2020 - nature.com
To understand the function of cortical circuits, it is necessary to catalog their cellular
diversity. Past attempts to do so using anatomical, physiological or molecular features of …

Parkinson-associated risk variant in distal enhancer of α-synuclein modulates target gene expression

F Soldner, Y Stelzer, CS Shivalila, BJ Abraham… - Nature, 2016 - nature.com
Genome-wide association studies (GWAS) have identified numerous genetic variants
associated with complex diseases, but mechanistic insights are impeded by a lack of …

Adolescence is associated with genomically patterned consolidation of the hubs of the human brain connectome

KJ Whitaker, PE Vértes… - Proceedings of the …, 2016 - National Acad Sciences
How does human brain structure mature during adolescence? We used MRI to measure
cortical thickness and intracortical myelination in 297 population volunteers aged 14–24 y …

Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data

BF Miller, F Huang, L Atta, A Sahoo, J Fan - Nature communications, 2022 - nature.com
Recent technological advancements have enabled spatially resolved transcriptomic profiling
but at multi-cellular pixel resolution, thereby hindering the identification of cell-type-specific …

[HTML][HTML] Master transcription factors and mediator establish super-enhancers at key cell identity genes

WA Whyte, DA Orlando, D Hnisz, BJ Abraham, CY Lin… - Cell, 2013 - cell.com
Summary Master transcription factors Oct4, Sox2, and Nanog bind enhancer elements and
recruit Mediator to activate much of the gene expression program of pluripotent embryonic …