[HTML][HTML] HydroShare retrospective: Science and technology advances of a comprehensive data and model publication environment for the water science domain

DG Tarboton, DP Ames, JS Horsburgh… - … Modelling & Software, 2023 - Elsevier
Recent decades have witnessed a massive increase in the volume and quality of hydrologic
data available to aid water resources decision makers, managers, and scientists. This has …

From open data to open science

R Ramachandran, K Bugbee… - Earth and Space …, 2021 - Wiley Online Library
The open science movement continues to gain momentum, attention, and discussion.
However, there are a number of different interpretations, viewpoints, and perspectives as to …

Fixing dependency errors for Python build reproducibility

S Mukherjee, A Almanza… - Proceedings of the 30th …, 2021 - dl.acm.org
Software reproducibility is important for re-usability and the cumulative progress of research.
An important manifestation of unreproducible software is the changed outcome of software …

Data provenance

B Glavic - Foundations and Trends® in Databases, 2021 - nowpublishers.com
Data provenance has evolved from a niche topic to a mainstream area of research in
databases and other research communities. This article gives a comprehensive introduction …

[HTML][HTML] Recent advances in biomedical simulations: a manifesto for model engineering

JL Hellerstein, S Gu, K Choi, HM Sauro - F1000Research, 2019 - ncbi.nlm.nih.gov
Biomedical simulations are widely used to understand disease, engineer cells, and model
cellular processes. In this article, we explore how to improve the quality of biomedical …

Comparing containerization-based approaches for reproducible computational modeling of environmental systems

YD Choi, B Roy, J Nguyen, R Ahmad, I Maghami… - … Modelling & Software, 2023 - Elsevier
Creating online data repositories that follow Findable, Accessible, Interoperable, and
Reusable (FAIR) principles has been a significant focus in the research community to …

A taxonomy for reproducible and replicable research in environmental modelling

BT Essawy, JL Goodall, D Voce, MM Morsy… - … Modelling & Software, 2020 - Elsevier
Despite the growing acknowledgment of reproducibility crisis in computational science,
there is still a lack of clarity around what exactly constitutes a reproducible or replicable …

On the reproducibility of software defect datasets

HN Zhu, C Rubio-González - 2023 IEEE/ACM 45th …, 2023 - ieeexplore.ieee.org
Software defect datasets are crucial to facilitating the evaluation and comparison of
techniques in fields such as fault localization, test generation, and automated program …

Automatic reuse, adaption, and execution of simulation experiments via provenance patterns

P Wilsdorf, A Wolpers, J Hilton, F Haack… - ACM Transactions on …, 2023 - dl.acm.org
Simulation experiments are typically conducted repeatedly during the model development
process, for example, to revalidate if a behavioral property still holds after several model …

Integrating scientific cyberinfrastructures to improve reproducibility in computational hydrology: Example for HydroShare and GeoTrust

BT Essawy, JL Goodall, W Zell, D Voce… - … Modelling & Software, 2018 - Elsevier
The reproducibility of computational environmental models is an important challenge that
calls for open and reusable code and data, well-documented workflows, and controlled …