Interpretation of T cell states from single-cell transcriptomics data using reference atlases

M Andreatta, J Corria-Osorio, S Müller, R Cubas… - Nature …, 2021 - nature.com
Single-cell RNA sequencing (scRNA-seq) has revealed an unprecedented degree of
immune cell diversity. However, consistent definition of cell subtypes and cell states across …

[HTML][HTML] A guide to cancer immunotherapy: from T cell basic science to clinical practice

AD Waldman, JM Fritz, MJ Lenardo - Nature Reviews Immunology, 2020 - nature.com
The T lymphocyte, especially its capacity for antigen-directed cytotoxicity, has become a
central focus for engaging the immune system in the fight against cancer. Basic science …

Breast tumor microenvironment structures are associated with genomic features and clinical outcome

E Danenberg, H Bardwell, VRT Zanotelli… - Nature …, 2022 - nature.com
The functions of the tumor microenvironment (TME) are orchestrated by precise spatial
organization of specialized cells, yet little is known about the multicellular structures that …

The interaction of CD4+ helper T cells with dendritic cells shapes the tumor microenvironment and immune checkpoint blockade response

M Cohen, A Giladi, O Barboy, P Hamon, B Li, M Zada… - Nature cancer, 2022 - nature.com
Despite their key regulatory role and therapeutic potency, the molecular signatures of
interactions between T cells and antigen-presenting myeloid cells within the tumor …

Single-cell analyses inform mechanisms of myeloid-targeted therapies in colon cancer

L Zhang, Z Li, KM Skrzypczynska, Q Fang, W Zhang… - Cell, 2020 - cell.com
Single-cell RNA sequencing (scRNA-seq) is a powerful tool for defining cellular diversity in
tumors, but its application toward dissecting mechanisms underlying immune-modulating …

Spatiotemporal analysis of human intestinal development at single-cell resolution

D Fawkner-Corbett, A Antanaviciute, K Parikh… - Cell, 2021 - cell.com
Development of the human intestine is not well understood. Here, we link single-cell RNA
sequencing and spatial transcriptomics to characterize intestinal morphogenesis through …

Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma

N Kim, HK Kim, K Lee, Y Hong, JH Cho… - Nature …, 2020 - nature.com
Advanced metastatic cancer poses utmost clinical challenges and may present molecular
and cellular features distinct from an early-stage cancer. Herein, we present single-cell …

Top 10 challenges in cancer immunotherapy

PS Hegde, DS Chen - Immunity, 2020 - cell.com
Cancer immunotherapy is a validated and critically important approach for treating patients
with cancer. Given the vast research and clinical investigation efforts dedicated to advancing …

High-throughput and single-cell T cell receptor sequencing technologies

JA Pai, AT Satpathy - Nature methods, 2021 - nature.com
T cells express T cell receptors (TCRs) composed of somatically recombined TCRα and
TCRβ chains, which mediate recognition of major histocompatibility complex (MHC)–antigen …

CD8+ T cell states in human cancer: insights from single-cell analysis

AM Van der Leun, DS Thommen… - Nature Reviews …, 2020 - nature.com
The T cell infiltrates that are formed in human cancers are a modifier of natural disease
progression and also determine the probability of clinical response to cancer …