The tumor microenvironment in the response to immune checkpoint blockade therapies

F Petitprez, M Meylan, A de Reyniès… - Frontiers in …, 2020 - frontiersin.org
Tumor cells constantly interact with their microenvironment, which comprises a variety of
immune cells together with endothelial cells and fibroblasts. The composition of the tumor …

Single-cell dissection of cellular components and interactions shaping the tumor immune phenotypes in ovarian cancer

M Hornburg, M Desbois, S Lu, Y Guan, AA Lo… - Cancer cell, 2021 - cell.com
Distinct T cell infiltration patterns, ie, immune infiltrated, excluded, and desert, result in
different responses to cancer immunotherapies. However, the key determinants and biology …

The landscape of tumor cell states and ecosystems in diffuse large B cell lymphoma

CB Steen, BA Luca, MS Esfahani, A Azizi, BJ Sworder… - Cancer cell, 2021 - cell.com
Biological heterogeneity in diffuse large B cell lymphoma (DLBCL) is partly driven by cell-of-
origin subtypes and associated genomic lesions, but also by diverse cell types and cell …

Tumor-associated macrophages: recent insights and therapies

J Zhou, Z Tang, S Gao, C Li, Y Feng, X Zhou - Frontiers in oncology, 2020 - frontiersin.org
Macrophages, which have functions of engulfing and digesting foreign substances, can
clear away harmful matter, including cellular debris and tumor cells. Based on the condition …

Current best practices in single‐cell RNA‐seq analysis: a tutorial

MD Luecken, FJ Theis - Molecular systems biology, 2019 - embopress.org
Single‐cell RNA‐seq has enabled gene expression to be studied at an unprecedented
resolution. The promise of this technology is attracting a growing user base for single‐cell …

Fast, sensitive and accurate integration of single-cell data with Harmony

I Korsunsky, N Millard, J Fan, K Slowikowski, F Zhang… - Nature …, 2019 - nature.com
The emerging diversity of single-cell RNA-seq datasets allows for the full transcriptional
characterization of cell types across a wide variety of biological and clinical conditions …

Tumor-specific cytolytic CD4 T cells mediate immunity against human cancer

A Cachot, M Bilous, YC Liu, X Li, M Saillard… - Science …, 2021 - science.org
CD4 T cells have been implicated in cancer immunity for their helper functions. Moreover,
their direct cytotoxic potential has been shown in some patients with cancer. Here, by mining …

The heterogeneous immune landscape between lung adenocarcinoma and squamous carcinoma revealed by single-cell RNA sequencing

C Wang, Q Yu, T Song, Z Wang, L Song… - … and Targeted Therapy, 2022 - nature.com
A thorough interrogation of the immune landscape is crucial for immunotherapy strategy
selection and prediction of clinical responses in non-small-cell lung cancer (NSCLC) …

Regulatory T cells and human disease

S Sakaguchi, N Mikami, JB Wing… - Annual review of …, 2020 - annualreviews.org
Naturally occurring CD4+ regulatory T cells (Tregs), which specifically express the
transcription factor FoxP3 in the nucleus and CD25 and CTLA-4 on the cell surface, are a …

[HTML][HTML] Metabolic regulatory crosstalk between tumor microenvironment and tumor-associated macrophages

D Chen, X Zhang, Z Li, B Zhu - Theranostics, 2021 - ncbi.nlm.nih.gov
Macrophages phagocytize pathogens to initiate innate immunity and products from the
tumor microenvironment (TME) to mediate tumor immunity. The loss of tumor-associated …