Multimodal data integration for oncology in the era of deep neural networks: a review

A Waqas, A Tripathi, RP Ramachandran… - arXiv preprint arXiv …, 2023 - arxiv.org
Cancer has relational information residing at varying scales, modalities, and resolutions of
the acquired data, such as radiology, pathology, genomics, proteomics, and clinical records …

GOGGLE: Generative modelling for tabular data by learning relational structure

T Liu, Z Qian, J Berrevoets… - … Conference on Learning …, 2022 - openreview.net
Deep generative models learn highly complex and non-linear representations to generate
realistic synthetic data. While they have achieved notable success in computer vision and …

Learning representations without compositional assumptions

T Liu, J Berrevoets, Z Qian… - … on Machine Learning, 2023 - proceedings.mlr.press
This paper addresses unsupervised representation learning on tabular data containing
multiple views generated by distinct sources of measurement. Traditional methods, which …

Multitask-Guided Self-Supervised Tabular Learning for Patient-Specific Survival Prediction

Y Wu, O Bazgir, Y Lee, T Biancalani… - Machine Learning …, 2024 - proceedings.mlr.press
Survival prediction, central to the analysis of clinical trials, has the potential to be
transformed by the availability of RNA-seq data as it reveals the underlying molecular and …

Embedding-based Multimodal Learning on Pan-Squamous Cell Carcinomas for Improved Survival Outcomes

A Waqas, A Tripathi, P Stewart, M Naeini… - arXiv preprint arXiv …, 2024 - arxiv.org
Cancer clinics capture disease data at various scales, from genetic to organ level. Current
bioinformatic methods struggle to handle the heterogeneous nature of this data, especially …

Score-based graph generative modeling with self-guided latent diffusion

L Yang, Z Zhang, W Zhang, S Hong - 2022 - openreview.net
Graph generation is a fundamental task in machine learning, and it is critical for numerous
real-world applications, biomedical discovery and social science. Existing diffusion-based …

On the Consistency of GNN Explainability Methods

E Hajiramezanali, S Maleki, A Tseng… - XAI in Action: Past …, 2023 - openreview.net
Despite the widespread utilization of post-hoc explanation methods for graph neural
networks (GNNs) in high-stakes settings, there has been a lack of comprehensive evaluation …