Genome-wide investigations on regulatory functions of RECQ1 helicase

S Debnath, X Lu, A Lal, S Sharma - Methods, 2022 - Elsevier
DNA helicase RECQ1 (also known as RECQL or RECQL1) is a candidate breast cancer
susceptibility gene significantly correlated with clinical outcomes of sporadic breast cancer …

A unique glimpse into the crosstalk between different epigenetic mechanisms in porcine embryonic development

J Gan, X Zhang, Y Lu, Z Wu, G Cai… - Biology of …, 2022 - academic.oup.com
The pig is an excellent animal model for simulating human physiology and a major animal
for meat production and xenotransplantation. Therefore, researching porcine embryonic …

[HTML][HTML] The Principles and Applications of High-Throughput Sequencing Technologies

JY Lee - Development & Reproduction, 2023 - ncbi.nlm.nih.gov
The advancement in high-throughput sequencing (HTS) technology has revolutionized the
field of biology, including genomics, epigenomics, transcriptomics, and metagenomics. This …

Mechanisms of enhancer function in neuronal systems in health and disease

L Zea-Redondo, A Pombo - Current Opinion in Systems Biology, 2023 - Elsevier
Enhancers are genomic elements that regulate gene expression through a variety of
mechanisms. In neuronal systems, enhancer-promoter interactions regulate cell-and tissue …

[HTML][HTML] Analysis of the landscape of human enhancer sequences in biological databases

JM Hernández, JT Fernández-Breis - Computational and Structural …, 2022 - Elsevier
The process of gene regulation extends as a network in which both genetic sequences and
proteins are involved. The levels of regulation and the mechanisms involved are multiple …

[HTML][HTML] Genome-wide mapping and microscopy visualization of protein–DNA interactions by pA-DamID

T van Schaik, SG Manzo, B van Steensel - Chromatin: Methods and …, 2022 - Springer
Several methods have been developed to map protein–DNA interactions genome-wide in
the last decades. Protein A-DamID (pA-DamID) is a recent addition to this list with distinct …

[PDF][PDF] Multiomic chromatin and transcription profiling with EpiDamID

S Gopalan, TG Fazzio - Cell Reports Methods, 2022 - cell.com
DamID maps protein-genome interactions using DNA adenine methyltransferase tethered to
individual chromatin proteins. In a recent issue of Molecluar Cell, Rang et al. introduce …

Multimodal Methods for Knowledge Discovery from Bulk and Single-Cell Multi-Omics Data

Y Li, G Fonseca, J Ding - Machine Learning Methods for Multi-Omics Data …, 2023 - Springer
Multi-omics measurements (bulk and single-cell) are essential to depict the cellular states
comprehensively and thus could derive a deep understanding of underlying mechanisms for …

[图书][B] Epigenetics and DNA Damage

MG Jasiulionis - 2022 - books.google.com
Although scientists recognize the role of epigenetic mechanisms in DNA damage response,
the complex, mechanistic interplay between chromatin regulation and DNA repair is still …

[HTML][HTML] Set1 targets genes with essential identity and tumor-suppressing functions in planarian stem cells

P Verma, CKM Waterbury, EM Duncan - Genes, 2021 - mdpi.com
Tumor suppressor genes (TSGs) are essential for normal cellular function in multicellular
organisms, but many TSGs and tumor-suppressing mechanisms remain unknown. Planarian …