[HTML][HTML] Organization of the human intestine at single-cell resolution

JW Hickey, WR Becker, SA Nevins, A Horning… - Nature, 2023 - nature.com
The intestine is a complex organ that promotes digestion, extracts nutrients, participates in
immune surveillance, maintains critical symbiotic relationships with microbiota and affects …

[HTML][HTML] Integration of spatial and single-cell data across modalities with weakly linked features

S Chen, B Zhu, S Huang, JW Hickey, KZ Lin… - Nature …, 2023 - nature.com
Although single-cell and spatial sequencing methods enable simultaneous measurement of
more than one biological modality, no technology can capture all modalities within the same …

Multimodal deep learning approaches for single-cell multi-omics data integration

T Athaya, RC Ripan, X Li, H Hu - Briefings in Bioinformatics, 2023 - academic.oup.com
Integrating single-cell multi-omics data is a challenging task that has led to new insights into
complex cellular systems. Various computational methods have been proposed to effectively …

Multiplex protein imaging in tumour biology

N de Souza, S Zhao, B Bodenmiller - Nature Reviews Cancer, 2024 - nature.com
Tissue imaging has become much more colourful in the past decade. Advances in both
experimental and analytical methods now make it possible to image protein markers in …

[HTML][HTML] Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology

T Hu, M Allam, S Cai, W Henderson, B Yueh… - Nature …, 2023 - nature.com
Metabolic reprogramming in cancer and immune cells occurs to support their increasing
energy needs in biological tissues. Here we propose Single Cell Spatially resolved …

[PDF][PDF] Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy

JL McFaline-Figueroa, S Srivatsan, AJ Hill, M Gasperini… - Cell Genomics, 2024 - cell.com
Chemical genetic screens are a powerful tool for exploring how cancer cells' response to
drugs is shaped by their mutations, yet they lack a molecular view of the contribution of …

Advances in Clinical Mass Cytometry

A Koladiya, KL Davis - Clinics in Laboratory Medicine, 2023 - labmed.theclinics.com
As patient-tailored therapies are becoming routine, improved methods for comprehensive
profiling of responses at the single-cell level are required. Flow cytometry (FCM) is a …

PANINI: Combined protein and nucleic acid imaging in tissues

S Jiang - Nature Reviews Immunology, 2024 - nature.com
PANINI: Combined protein and nucleic acid imaging in tissues Page 1 nature
reviewsimmunology https://doi.org/10.1038/s41577-024-01028-2 Research highlights Tools …

scCorrector: a robust method for integrating multi-study single-cell data

ZH Guo, YB Wang, S Wang, Q Zhang… - Briefings in …, 2024 - academic.oup.com
The advent of single-cell sequencing technologies has revolutionized cell biology studies.
However, integrative analyses of diverse single-cell data face serious challenges, including …

Database matching under noisy synchronization errors

S Bakirtas, E Erkip - IEEE Transactions on Information Theory, 2024 - ieeexplore.ieee.org
The re-identification or de-anonymization of users from anonymized data through matching
with publicly available correlated user data has raised privacy concerns, leading to the …