[HTML][HTML] Interpretation of mRNA splicing mutations in genetic disease: review of the literature and guidelines for information-theoretical analysis

N Caminsky, EJ Mucaki, PK Rogan - F1000Research, 2014 - ncbi.nlm.nih.gov
The interpretation of genomic variants has become one of the paramount challenges in the
post-genome sequencing era. In this review we summarize nearly 20 years of research on …

Exome sequencing explained: a practical guide to its clinical application

EG Seaby, RJ Pengelly, S Ennis - Briefings in functional …, 2016 - academic.oup.com
Next-generation sequencing has catapulted healthcare into a revolutionary genomics era.
One such technology, whole-exome sequencing, which targets the protein-coding regions of …

Phenotypic screening models for rapid diagnosis of genetic variants and discovery of personalized therapeutics

CE Hopkins, T Brock, TR Caulfield… - Molecular aspects of …, 2023 - Elsevier
Precision medicine strives for highly individualized treatments for disease under the notion
that each individual's unique genetic makeup and environmental exposures imprints upon …

De novo Mutations From Whole Exome Sequencing in Neurodevelopmental and Psychiatric Disorders: From Discovery to Application

W Wang, R Corominas, GN Lin - Frontiers in genetics, 2019 - frontiersin.org
Neurodevelopmental and psychiatric disorders are a highly disabling and heterogeneous
group of developmental and mental disorders, resulting from complex interactions of genetic …

Computational methods for the pharmacogenetic interpretation of next generation sequencing data

Y Zhou, K Fujikura, S Mkrtchian… - Frontiers in …, 2018 - frontiersin.org
Up to half of all patients do not respond to pharmacological treatment as intended. A
substantial fraction of these inter-individual differences is due to heritable factors and a …

Genomic HEXploring allows landscaping of novel potential splicing regulatory elements

S Erkelenz, S Theiss, M Otte, M Widera… - Nucleic acids …, 2014 - academic.oup.com
Effective splice site selection is critically controlled by flanking splicing regulatory elements
(SREs) that can enhance or repress splice site use. Although several computational …

S-CAP extends pathogenicity prediction to genetic variants that affect RNA splicing

KA Jagadeesh, JM Paggi, JS Ye, PD Stenson… - Nature …, 2019 - nature.com
Exome analysis of patients with a likely monogenic disease does not identify a causal
variant in over half of cases. Splice-disrupting mutations make up the second largest class of …

All exons are not created equal—exon vulnerability determines the effect of exonic mutations on splicing

LL Holm, TK Doktor, KK Flugt… - Nucleic Acids …, 2024 - academic.oup.com
It is now widely accepted that aberrant splicing of constitutive exons is often caused by
mutations affecting cis-acting splicing regulatory elements (SREs), but there is a …

Novel, rare and common pathogenic variants in the CFTR gene screened by high-throughput sequencing technology and predicted by in silico tools

SVN Pereira, JD Ribeiro, AF Ribeiro, CS Bertuzzo… - Scientific Reports, 2019 - nature.com
Cystic fibrosis (CF) is caused by~ 300 pathogenic CFTR variants. The heterogeneity of
which, challenges molecular diagnosis and precision medicine approaches in CF. Our …

The functional relevance of somatic synonymous mutations in melanoma and other cancers

V Gotea, JJ Gartner, N Qutob, L Elnitski… - Pigment cell & …, 2015 - Wiley Online Library
Recent technological advances in sequencing have flooded the field of cancer research with
knowledge about somatic mutations for many different cancer types. Most cancer genomics …