[HTML][HTML] Expanding PROTACtable genome universe of E3 ligases

Y Liu, J Yang, T Wang, M Luo, Y Chen, C Chen… - Nature …, 2023 - nature.com
Proteolysis-targeting chimera (PROTAC) and other targeted protein degradation (TPD)
molecules that induce degradation by the ubiquitin-proteasome system (UPS) offer new …

Protein–protein interfaces in molecular glue-induced ternary complexes: classification, characterization, and prediction

H Rui, KS Ashton, J Min, C Wang, PR Potts - RSC Chemical Biology, 2023 - pubs.rsc.org
Molecular glues are a class of small molecules that stabilize the interactions between
proteins. Naturally occurring molecular glues are present in many areas of biology where …

Artificial Intelligence in Point-of-Care Biosensing: Challenges and Opportunities

CD Flynn, D Chang - Diagnostics, 2024 - mdpi.com
The integration of artificial intelligence (AI) into point-of-care (POC) biosensing has the
potential to revolutionize diagnostic methodologies by offering rapid, accurate, and …

Modeling the CRL4A ligase complex to predict target protein ubiquitination induced by cereblon-recruiting PROTACs

N Bai, KM Riching, A Makaju, H Wu, TM Acker… - Journal of Biological …, 2022 - ASBMB
PROteolysis TArgeting Chimeras (PROTACs) are hetero-bifunctional small molecules that
can simultaneously recruit target proteins and E3 ligases to form a ternary complex …

Artificial intelligence in omics

F Gao, K Huang, Y Xing - Genomics, Proteomics and …, 2022 - academic.oup.com
Artificial intelligence (AI) is a powerful approach for solving complex problems in the
processing, analysis, and interpretation of omics data, as well as the integration of multi …

Targeted protein degradation: Design considerations for PROTAC development

NL Tran, GA Leconte, FM Ferguson - Current protocols, 2022 - Wiley Online Library
Targeted protein degradation has recently gained widespread interest as both a novel
therapeutic strategy and a useful tool in biomedical research. Targeted protein degraders …

[HTML][HTML] Accelerating PROTAC drug discovery: Establishing a relationship between ubiquitination and target protein degradation

PH Gross, KJ Sheets, NA Warren, S Ghosh… - Biochemical and …, 2022 - Elsevier
PROTACs have emerged as a new class of drugs that can target the “undruggable”
proteome by hijacking the ubiquitin proteasome system. Despite PROTACs' success, most …

Revolutionizing Drug Targeting Strategies: Integrating Artificial Intelligence and Structure-Based Methods in PROTAC Development

Danishuddin, MS Jamal, KS Song, KW Lee, JJ Kim… - Pharmaceuticals, 2023 - mdpi.com
PROteolysis TArgeting Chimera (PROTAC) is an emerging technology in chemical biology
and drug discovery. This technique facilitates the complete removal of the target proteins …

Targeting fusion oncoproteins in childhood cancers: challenges and future opportunities for developing therapeutics

SK Verma, KL Witkin, A Sharman… - JNCI: Journal of the …, 2024 - academic.oup.com
Fusion oncoproteins are associated with childhood cancers and have proven challenging to
target, aside from those that include kinases. As part of its efforts for targeting childhood …

Current challenges in small molecule proximity-inducing compound development for targeted protein degradation using the ubiquitin proteasomal system

S Radhakrishnan, O Hoff, MK Muellner - Molecules, 2022 - mdpi.com
Bivalent proximity-inducing compounds represent a novel class of small molecule
therapeutics with exciting potential and new challenges. The most prominent examples of …