[HTML][HTML] Live-cell imaging in the deep learning era

JW Pylvänäinen, E Gómez-de-Mariscal… - Current Opinion in Cell …, 2023 - Elsevier
Live imaging is a powerful tool, enabling scientists to observe living organisms in real time.
In particular, when combined with fluorescence microscopy, live imaging allows the …

Light-sheets and smart microscopy, an exciting future is dawning

S Daetwyler, RP Fiolka - Communications biology, 2023 - nature.com
Light-sheet fluorescence microscopy has transformed our ability to visualize and
quantitatively measure biological processes rapidly and over long time periods. In this …

Molecularly defined and spatially resolved cell atlas of the whole mouse brain

M Zhang, X Pan, W Jung, AR Halpern, SW Eichhorn… - Nature, 2023 - nature.com
In mammalian brains, millions to billions of cells form complex interaction networks to enable
a wide range of functions. The enormous diversity and intricate organization of cells have …

The multimodality cell segmentation challenge: toward universal solutions

J Ma, R Xie, S Ayyadhury, C Ge, A Gupta, R Gupta… - Nature …, 2024 - nature.com
Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images.
Existing cell segmentation methods are often tailored to specific modalities or require …

Towards foundation models of biological image segmentation

J Ma, B Wang - Nature Methods, 2023 - nature.com
Towards foundation models of biological image segmentation | Nature Methods Skip to main
content Thank you for visiting nature.com. You are using a browser version with limited support …

Spatial transcriptomics: technical aspects of recent developments and their applications in neuroscience and cancer research

HE Park, SH Jo, RH Lee, CP Macks, T Ku… - Advanced …, 2023 - Wiley Online Library
Spatial transcriptomics is a newly emerging field that enables high‐throughput investigation
of the spatial localization of transcripts and related analyses in various applications for …

ROS-induced ribosome impairment underlies ZAKα-mediated metabolic decline in obesity and aging

G Snieckute, L Ryder, AC Vind, Z Wu, FS Arendrup… - Science, 2023 - science.org
The ribotoxic stress response (RSR) is a signaling pathway in which the p38-and c-Jun N-
terminal kinase (JNK)–activating mitogen-activated protein kinase kinase kinase (MAP3K) …

When seeing is not believing: application-appropriate validation matters for quantitative bioimage analysis

J Chen, MP Viana, SM Rafelski - Nature Methods, 2023 - nature.com
A key step toward biologically interpretable analysis of microscopy image-based assays is
rigorous quantitative validation with metrics appropriate for the particular application in use …

The future of bioimage analysis: a dialog between mind and machine

LA Royer - Nature Methods, 2023 - nature.com
The field of bioimage analysis is poised for a major transformation, owing to advancements
in imaging technologies and artificial intelligence. The emergence of multimodal foundation …

p53 Regulates the extent of fibroblast proliferation and fibrosis in left ventricle pressure overload

X Liu, RM Burke, JK Lighthouse, CD Baker… - Circulation …, 2023 - Am Heart Assoc
BACKGROUND: Cardiomyopathy is characterized by the pathological accumulation of
resident cardiac fibroblasts that deposit ECM (extracellular matrix) and generate a fibrotic …