[HTML][HTML] Methods and applications of in silico aptamer design and modeling

AA Buglak, AV Samokhvalov, AV Zherdev… - International journal of …, 2020 - mdpi.com
Aptamers are nucleic acid analogues of antibodies with high affinity to different targets, such
as cells, viruses, proteins, inorganic materials, and coenzymes. Empirical approaches allow …

[HTML][HTML] Artificial intelligence in aptamer–target binding prediction

Z Chen, L Hu, BT Zhang, A Lu, Y Wang, Y Yu… - International journal of …, 2021 - mdpi.com
Aptamers are short single-stranded DNA, RNA, or synthetic Xeno nucleic acids (XNA)
molecules that can interact with corresponding targets with high affinity. Owing to their …

[HTML][HTML] Oligonucleotide aptamers for pathogen detection and infectious disease control

Q Wan, X Liu, Y Zu - Theranostics, 2021 - ncbi.nlm.nih.gov
During an epidemic or pandemic, the primary task is to rapidly develop precise diagnostic
approaches and effective therapeutics. Oligonucleotide aptamer-based pathogen detection …

[HTML][HTML] Design and prediction of aptamers assisted by in silico methods

SJ Lee, J Cho, BH Lee, D Hwang, JW Park - Biomedicines, 2023 - mdpi.com
An aptamer is a single-stranded DNA or RNA that binds to a specific target with high binding
affinity. Aptamers are developed through the process of systematic evolution of ligands by …

[HTML][HTML] Mass spectrometry-based structural virology

TP Wörner, TM Shamorkina, J Snijder… - Analytical …, 2020 - ACS Publications
Here we review recent developments in mass spectrometry that have enabled its growing
contribution to the field of structural virology. Evidently, there is a strong renewed general …

[HTML][HTML] Aptamers—diagnostic and therapeutic solution in SARS-CoV-2

T Wandtke, E Wędrowska, M Szczur… - International journal of …, 2022 - mdpi.com
The SARS-CoV-2 virus is currently the most serious challenge to global public health. Its
emergence has severely disrupted the functioning of health services and the economic and …

[HTML][HTML] Systematic evolution of ligands by exponential enrichment technologies and aptamer-based applications: Recent progress and challenges in precision …

Y Xu, X Jiang, Y Zhou, M Ma, M Wang… - … in Bioengineering and …, 2021 - frontiersin.org
Infectious diseases are considered as a pressing challenge to global public health. Accurate
and rapid diagnostics tools for early recognition of the pathogen, as well as individualized …

[HTML][HTML] Aptamers for anti-viral therapeutics and diagnostics

TH Kim, SW Lee - International Journal of Molecular Sciences, 2021 - mdpi.com
Viral infections cause a host of fatal diseases and seriously affect every form of life from
bacteria to humans. Although most viral infections can receive appropriate treatment thereby …

Aptamer-based antibacterial and antiviral therapy against infectious diseases

XF Chen, X Zhao, Z Yang - Journal of Medicinal Chemistry, 2021 - ACS Publications
Nucleic acid aptamers are single-stranded DNA or RNA molecules selected in vitro that can
bind to a broad range of targets with high affinity and specificity. As promising alternatives to …

Modeling noncanonical RNA base pairs by a coarse-grained IsRNA2 model

D Zhang, SJ Chen, R Zhou - The Journal of Physical Chemistry B, 2021 - ACS Publications
Noncanonical base pairs contribute crucially to the three-dimensional architecture of large
RNA molecules; however, how to accurately model them remains an open challenge in RNA …