[HTML][HTML] Single-cell multiomics: technologies and data analysis methods

J Lee, DY Hyeon, D Hwang - Experimental & Molecular Medicine, 2020 - nature.com
Advances in single-cell isolation and barcoding technologies offer unprecedented
opportunities to profile DNA, mRNA, and proteins at a single-cell resolution. Recently, bulk …

Spatially resolved mass spectrometry at the single cell: recent innovations in proteomics and metabolomics

MJ Taylor, JK Lukowski… - Journal of the American …, 2021 - ACS Publications
Biological systems are composed of heterogeneous populations of cells that
intercommunicate to form a functional living tissue. Biological function varies greatly across …

Challenges in unsupervised clustering of single-cell RNA-seq data

VY Kiselev, TS Andrews, M Hemberg - Nature Reviews Genetics, 2019 - nature.com
Single-cell RNA sequencing (scRNA-seq) allows researchers to collect large catalogues
detailing the transcriptomes of individual cells. Unsupervised clustering is of central …

Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells

EP Mimitou, A Cheng, A Montalbano, S Hao… - Nature …, 2019 - nature.com
Multimodal single-cell assays provide high-resolution snapshots of complex cell
populations, but are mostly limited to transcriptome plus an additional modality. Here, we …

Integrative methods and practical challenges for single-cell multi-omics

A Ma, A McDermaid, J Xu, Y Chang, Q Ma - Trends in biotechnology, 2020 - cell.com
Fast-developing single-cell multimodal omics (scMulti-omics) technologies enable the
measurement of multiple modalities, such as DNA methylation, chromatin accessibility, RNA …

Omics sciences for systems biology in Alzheimer's disease: State-of-the-art of the evidence

H Hampel, R Nisticò, NT Seyfried, AI Levey… - Ageing Research …, 2021 - Elsevier
Alzheimer's disease (AD) is characterized by non-linear, genetic-driven pathophysiological
dynamics with high heterogeneity in biological alterations and disease spatial-temporal …

[HTML][HTML] Prospects and challenges of multi-omics data integration in toxicology

S Canzler, J Schor, W Busch, K Schubert… - Archives of …, 2020 - Springer
Exposure of cells or organisms to chemicals can trigger a series of effects at the regulatory
pathway level, which involve changes of levels, interactions, and feedback loops of …

[HTML][HTML] Translational precision medicine: an industry perspective

D Hartl, V de Luca, A Kostikova, J Laramie… - Journal of translational …, 2021 - Springer
In the era of precision medicine, digital technologies and artificial intelligence, drug
discovery and development face unprecedented opportunities for product and business …

Modern epigenetics methods in biological research

Y Li - Methods, 2021 - Elsevier
The definition of epigenetics refers that molecular modifications on DNA that can regulate
gene activity are independent of DNA sequence and mitotically stable. Notably, epigenetics …

[HTML][HTML] Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer

L Cantini, P Zakeri, C Hernandez, A Naldi… - Nature …, 2021 - nature.com
High-dimensional multi-omics data are now standard in biology. They can greatly enhance
our understanding of biological systems when effectively integrated. To achieve proper …