[HTML][HTML] Sequence determinants for nuclear retention and cytoplasmic export of mRNAs and lncRNAs

AF Palazzo, ES Lee - Frontiers in genetics, 2018 - frontiersin.org
Eukaryotes are divided into two major compartments: the nucleus where RNA is synthesized
and processed, and the cytoplasm, where mRNA is translated into proteins. Although many …

Significance of lncRNA abundance to function

I Grammatikakis, A Lal - Mammalian Genome, 2022 - Springer
Long noncoding RNAs (lncRNAs) have emerged as regulators of diverse cellular processes.
Although the vast majority of lncRNAs are expressed at lower levels compared to …

[HTML][HTML] Long non-coding RNAs in plants: emerging modulators of gene activity in development and stress responses

L Chen, QH Zhu, K Kaufmann - Planta, 2020 - Springer
Main conclusion Long non-coding RNAs modulate gene activity in plant development and
stress responses by various molecular mechanisms. Abstract Long non-coding RNAs …

[HTML][HTML] FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells

E Kolundzic, A Ofenbauer, SI Bulut, B Uyar, G Baytek… - Developmental Cell, 2018 - cell.com
The chromatin regulator FACT (facilitates chromatin transcription) is essential for ensuring
stable gene expression by promoting transcription. In a genetic screen using Caenorhabditis …

Interactions between short and long noncoding RNAs

I Ulitsky - FEBS letters, 2018 - Wiley Online Library
It is now evident that noncoding RNAs play key roles in regulatory networks determining cell
fate and behavior, in a myriad of different conditions, and across all species. Among these …

Strategies to annotate and characterize long noncoding RNAs: advantages and pitfalls

H Cao, C Wahlestedt, P Kapranov - Trends in Genetics, 2018 - cell.com
The past decade has seen an explosion of interest in long noncoding RNAs (lncRNAs).
However, despite the massive volume of scientific data implicating these transcripts in a …

Activity-regulated synaptic targeting of lncRNA ADEPTR mediates structural plasticity by localizing Sptn1 and AnkB in dendrites

E Grinman, Y Nakahata, Y Avchalumov, I Espadas… - Science …, 2021 - science.org
Activity-dependent structural plasticity at the synapse requires specific changes in the
neuronal transcriptome. While much is known about the role of coding elements in this …

Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs

DM Ribeiro, A Zanzoni, A Cipriano… - Nucleic acids …, 2018 - academic.oup.com
The human transcriptome contains thousands of long non-coding RNAs (lncRNAs).
Characterizing their function is a current challenge. An emerging concept is that lncRNAs …

mRNA nuclear export: how mRNA identity features distinguish functional RNAs from junk transcripts

AF Palazzo, Y Qiu, YM Kang - RNA biology, 2024 - Taylor & Francis
The division of the cellular space into nucleoplasm and cytoplasm promotes quality control
mechanisms that prevent misprocessed mRNAs and junk RNAs from gaining access to the …

Restrictor synergizes with Symplekin and PNUTS to terminate extragenic transcription

M Russo, V Piccolo, D Polizzese… - Genes & …, 2023 - genesdev.cshlp.org
Transcription termination pathways mitigate the detrimental consequences of unscheduled
promiscuous initiation occurring at hundreds of thousands of genomic cis-regulatory …