[HTML][HTML] Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection

TS Postler, SN Pantry, RC Desrosiers, S Ghosh - Virology, 2017 - Elsevier
Long non-coding RNAs (lncRNAs) are rapidly emerging as important regulators of a diverse
array of cellular functions. Here, we describe a meta-analysis of two independent RNA-seq …

omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data

P Drewe-Boss, HH Wessels, U Ohler - Genome biology, 2018 - Springer
CLIP-seq methods allow the generation of genome-wide maps of RNA binding protein–RNA
interaction sites. However, due to differences between different CLIP-seq assays, existing …

New Insights into lncRNAs in Aβ Cascade Hypothesis of Alzheimer's Disease

Y Hao, B Xie, X Fu, R Xu, Y Yang - Biomolecules, 2022 - mdpi.com
Alzheimer's disease (AD) is the most common type of dementia, but its pathogenesis is not
fully understood, and effective drugs to treat or reverse the progression of the disease are …

Multiplexed single-cell characterization of alternative polyadenylation regulators

MH Kowalski, HH Wessels, J Linder, C Dalgarno… - Cell, 2024 - cell.com
Most mammalian genes have multiple polyA sites, representing a substantial source of
transcript diversity regulated by the cleavage and polyadenylation (CPA) machinery. To …

[HTML][HTML] RAD21 inhibited transcription of tumor suppressor MIR4697HG and led to glioma tumorigenesis

Y Mao, G Shen, Z Su, J Du, F Xu, Y Yu - Biomedicine & Pharmacotherapy, 2020 - Elsevier
Background Studies have revealed the aberrant expression of lncRNAs is responsible for
human carcinogenesis. MIR4697 host gene (MIR4697HG) is an upregulated lncRNA that …

T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation

A Landshammer, A Bolondi, H Kretzmer, C Much… - ELife, 2023 - elifesciences.org
Long non-coding RNAs (lncRNAs) have emerged as fundamental regulators in various
biological processes, including embryonic development and cellular differentiation. Despite …

Transcriptomic response dynamics of human primary and immortalized adrenocortical cells to steroidogenic stimuli

K Wellman, R Fu, A Baldwin, J Rege, E Murphy… - Cells, 2021 - mdpi.com
Adrenal steroid hormone production is a dynamic process stimulated by adrenocorticotropic
hormone (ACTH) and angiotensin II (AngII). These ligands initialize a rapid and robust gene …

Long non-coding RNAs and splicing

D Staněk - Essays in biochemistry, 2021 - portlandpress.com
In this review I focus on the role of splicing in long non-coding RNA (lncRNA) life. First, I
summarize differences between the splicing efficiency of protein-coding genes and lncRNAs …

Aging-regulated TUG1 is dispensable for endothelial cell function

AT Gimbel, S Koziarek, K Theodorou, JF Schulz… - Plos one, 2022 - journals.plos.org
The evolutionary conserved Taurine Upregulated Gene 1 (TUG1) is a ubiquitously
expressed gene that is one of the highest expressed genes in human and rodent endothelial …

Dynamically regulated transcription factors are encoded by highly unstable mRNAs in the Drosophila larval brain

MK Thompson, A Ceccarelli, D Ish-Horowicz, I Davis - Rna, 2023 - rnajournal.cshlp.org
The level of each RNA species depends on the balance between its rates of production and
decay. Although previous studies have measured RNA decay across the genome in tissue …