Scientific discovery in the age of artificial intelligence

H Wang, T Fu, Y Du, W Gao, K Huang, Z Liu… - Nature, 2023 - nature.com
Artificial intelligence (AI) is being increasingly integrated into scientific discovery to augment
and accelerate research, helping scientists to generate hypotheses, design experiments …

Generative models as an emerging paradigm in the chemical sciences

DM Anstine, O Isayev - Journal of the American Chemical Society, 2023 - ACS Publications
Traditional computational approaches to design chemical species are limited by the need to
compute properties for a vast number of candidates, eg, by discriminative modeling …

Digress: Discrete denoising diffusion for graph generation

C Vignac, I Krawczuk, A Siraudin, B Wang… - arXiv preprint arXiv …, 2022 - arxiv.org
This work introduces DiGress, a discrete denoising diffusion model for generating graphs
with categorical node and edge attributes. Our model utilizes a discrete diffusion process …

Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W Jin, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

Leveraging large language models for predictive chemistry

KM Jablonka, P Schwaller… - Nature Machine …, 2024 - nature.com
Abstract Machine learning has transformed many fields and has recently found applications
in chemistry and materials science. The small datasets commonly found in chemistry …

Artificial intelligence foundation for therapeutic science

K Huang, T Fu, W Gao, Y Zhao, Y Roohani… - Nature chemical …, 2022 - nature.com
Artificial intelligence (AI) is poised to transform therapeutic science. Therapeutics Data
Commons is an initiative to access and evaluate AI capability across therapeutic modalities …

Geometric deep learning on molecular representations

K Atz, F Grisoni, G Schneider - Nature Machine Intelligence, 2021 - nature.com
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …

Molecular contrastive learning of representations via graph neural networks

Y Wang, J Wang, Z Cao… - Nature Machine …, 2022 - nature.com
Molecular machine learning bears promise for efficient molecular property prediction and
drug discovery. However, labelled molecule data can be expensive and time consuming to …

MolGPT: molecular generation using a transformer-decoder model

V Bagal, R Aggarwal, PK Vinod… - Journal of Chemical …, 2021 - ACS Publications
Application of deep learning techniques for de novo generation of molecules, termed as
inverse molecular design, has been gaining enormous traction in drug design. The …

PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences

M Buttenschoen, GM Morris, CM Deane - Chemical Science, 2024 - pubs.rsc.org
The last few years have seen the development of numerous deep learning-based protein–
ligand docking methods. They offer huge promise in terms of speed and accuracy. However …