[HTML][HTML] Mapping human epigenomes

CM Rivera, B Ren - Cell, 2013 - cell.com
As the second dimension to the genome, the epigenome contains key information specific to
every type of cells. Thousands of human epigenome maps have been produced in recent …

Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer

C Plass, SM Pfister, AM Lindroth, O Bogatyrova… - Nature reviews …, 2013 - nature.com
Malignancies are characterized by extensive global reprogramming of epigenetic patterns,
including gains or losses in DNA methylation and changes to histone marks. Furthermore …

Simultaneous profiling of 3D genome structure and DNA methylation in single human cells

DS Lee, C Luo, J Zhou, S Chandran, A Rivkin… - Nature …, 2019 - nature.com
Dynamic three-dimensional chromatin conformation is a critical mechanism for gene
regulation during development and disease. Despite this, profiling of three-dimensional …

Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment

JR Hughes, N Roberts, S McGowan, D Hay… - Nature …, 2014 - nature.com
Gene expression during development and differentiation is regulated in a cell-and stage-
specific manner by complex networks of intergenic and intragenic cis-regulatory elements …

RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas

ZS Bao, HM Chen, MY Yang, CB Zhang, K Yu… - Genome …, 2014 - genome.cshlp.org
Studies of gene rearrangements and the consequent oncogenic fusion proteins have laid
the foundation for targeted cancer therapy. To identify oncogenic fusions associated with …

Epigenetics, plasticity, and evolution: How do we link epigenetic change to phenotype?

EJ Duncan, PD Gluckman… - Journal of Experimental …, 2014 - Wiley Online Library
Epigenetic mechanisms are proposed as an important way in which the genome responds
to the environment. Epigenetic marks, including DNA methylation and Histone modifications …

Enhancer variants: evaluating functions in common disease

O Corradin, PC Scacheri - Genome medicine, 2014 - Springer
Gene enhancer elements are noncoding segments of DNA that play a central role in
regulating transcriptional programs that control development, cell identity, and evolutionary …

Genome organization and long-range regulation of gene expression by enhancers

A Smallwood, B Ren - Current opinion in cell biology, 2013 - Elsevier
It is now well accepted that cell-type specific gene regulation is under the purview of
enhancers. Great strides have been made recently to characterize and identify enhancers …

The force is strong with this epigenome: chromatin structure and mechanobiology

CR Hsia, DP Melters, Y Dalal - Journal of Molecular Biology, 2023 - Elsevier
All life forms sense and respond to mechanical stimuli. Throughout evolution, organisms
develop diverse mechanosensing and mechanotransduction pathways, leading to fast and …

Transcriptional and epigenetic regulation of T‐helper lineage specification

SK Tripathi, R Lahesmaa - Immunological reviews, 2014 - Wiley Online Library
Combined with TCR stimuli, extracellular cytokine signals initiate the differentiation of naive
CD 4+ T cells into specialized effector T‐helper (Th) and regulatory T (Treg) cell subsets …