A genome-wide Epstein-Barr virus polyadenylation map and its antisense RNA to EBNA
V Majerciak, W Yang, J Zheng, J Zhu… - Journal of virology, 2019 - Am Soc Microbiol
Epstein-Barr virus (EBV) is a ubiquitous human pathogen associated with Burkitt's
lymphoma and nasopharyngeal carcinoma. Although the EBV genome harbors more than a …
lymphoma and nasopharyngeal carcinoma. Although the EBV genome harbors more than a …
An overview of methodologies in studying lncRNAs in the high-throughput era: when acronyms ATTACK!
HLV Wang, JA Chekanova - Plant Long Non-Coding RNAs: Methods and …, 2019 - Springer
The discovery of pervasive transcription in eukaryotic genomes provided one of many
surprising (and perhaps most surprising) findings of the genomic era and led to the …
surprising (and perhaps most surprising) findings of the genomic era and led to the …
Transcription Start Site Evolution in Drosophila
Transcription start site (TSS) evolution remains largely undescribed in Drosophila, likely due
to limited annotations in non-melanogaster species. In this study, we introduce a concise …
to limited annotations in non-melanogaster species. In this study, we introduce a concise …
Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation
Motivation: Pre-mRNA cleavage and polyadenylation are essential steps for 3′-end
maturation and subsequent stability and degradation of mRNAs. This process is highly …
maturation and subsequent stability and degradation of mRNAs. This process is highly …
KSHV 3.0: a state-of-the-art annotation of the Kaposi's sarcoma-associated herpesvirus transcriptome using cross-platform sequencing
Kaposi's sarcoma-associated herpesvirus (KSHV) is a large, oncogenic DNA virus
belonging to the gammaherpesvirus subfamily. KSHV has been extensively studied with …
belonging to the gammaherpesvirus subfamily. KSHV has been extensively studied with …
The NSL complex-mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise
Nucleosomal organization at gene promoters is critical for transcription, with a nucleosome-
depleted region (NDR) at transcription start sites (TSSs) being required for transcription …
depleted region (NDR) at transcription start sites (TSSs) being required for transcription …
Transcriptional regulation during zygotic genome activation in zebrafish and other anamniote embryos
Embryo development commences with the fusion of two terminally differentiated haploid
gametes into the totipotent fertilized egg, which through a series of major cellular and …
gametes into the totipotent fertilized egg, which through a series of major cellular and …
Developmentally regulated internal transcription initiation during meiosis in budding yeast
S Zhou, R Sternglanz, AM Neiman - PLoS One, 2017 - journals.plos.org
Sporulation of budding yeast is a developmental process in which cells undergo meiosis to
generate stress-resistant progeny. The dynamic nature of the budding yeast meiotic …
generate stress-resistant progeny. The dynamic nature of the budding yeast meiotic …
Identification of cis-regulatory sequence variations in individual genome sequences
Functional contributions of cis-regulatory sequence variations to human genetic disease are
numerous. For instance, disrupting variations in a HNF4A transcription factor binding site …
numerous. For instance, disrupting variations in a HNF4A transcription factor binding site …
Human papillomavirus type 58 genome variations and RNA expression in cervical lesions
Y Li, X Wang, T Ni, F Wang, W Lu, J Zhu, X Xie… - Journal of …, 2013 - Am Soc Microbiol
ABSTRACT Human papillomavirus type 58 (HPV58) is relatively prevalent in China and
other Asian countries. In this study, the HPV58 genome in cervical lesions was decoded …
other Asian countries. In this study, the HPV58 genome in cervical lesions was decoded …