Advances in chemical and biological methods to identify microorganisms—from past to present

R Franco-Duarte, L Černáková, S Kadam, K S. Kaushik… - Microorganisms, 2019 - mdpi.com
Fast detection and identification of microorganisms is a challenging and significant feature
from industry to medicine. Standard approaches are known to be very time-consuming and …

Microbial functional diversity: from concepts to applications

A Escalas, L Hale, JW Voordeckers… - Ecology and …, 2019 - Wiley Online Library
Functional diversity is increasingly recognized by microbial ecologists as the essential link
between biodiversity patterns and ecosystem functioning, determining the trophic …

Mildly acidic pH selects for chain elongation to caproic acid over alternative pathways during lactic acid fermentation

P Candry, L Radić, J Favere, JM Carvajal-Arroyo… - Water Research, 2020 - Elsevier
Carbohydrate-rich waste streams can be used for bioproduction of medium-chain carboxylic
acids (MCCA) such as caproic acid. The carbohydrates in these streams can be converted to …

[HTML][HTML] Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome

KN Lam, P Spanogiannopoulos, P Soto-Perez… - Cell Reports, 2021 - cell.com
Mechanistic insights into the role of the human microbiome in the predisposition to and
treatment of disease are limited by the lack of methods to precisely add or remove microbial …

[HTML][HTML] The microbial growth potential of antiscalants used in seawater desalination

G Hasanin, AM Mosquera, AH Emwas, T Altmann… - Water research, 2023 - Elsevier
Abstract 20 years since the first report on the biofouling potential of chemicals used for scale
control, still, antiscalants with high bacterial growth potential are used in practice. Evaluating …

Gut microbiota response to in vitro transit time variation is mediated by microbial growth rates, nutrient use efficiency and adaptation to in vivo transit time

Y Minnebo, K Delbaere, V Goethals, J Raes… - Microbiome, 2023 - Springer
Background Transit time is an important modulator of the human gut microbiome. The
inability to modify transit time as the sole variable hampers mechanistic in vivo microbiome …

[HTML][HTML] Microbiomes in drinking water treatment and distribution: A meta-analysis from source to tap

C Thom, CJ Smith, G Moore, P Weir, UZ Ijaz - Water Research, 2022 - Elsevier
A meta-analysis of existing and available Illumina 16S rRNA datasets from drinking water
source, treatment and drinking water distribution systems (DWDS) were collated to compare …

A review of landfill microbiology and ecology: a call for modernization with 'next generation'technology

DAR Meyer-Dombard, JE Bogner, J Malas - Frontiers in Microbiology, 2020 - frontiersin.org
Engineered and monitored sanitary landfills have been widespread in the United States
since the passage of the Clean Water Act (1972) with additional controls under RCRA …

The quest for absolute abundance: The use of internal standards for DNA‐based community ecology

JG Harrison, W John Calder, B Shuman… - Molecular Ecology …, 2021 - Wiley Online Library
To characterize microbiomes and other ecological assemblages, ecologists routinely
sequence and compare loci that differ among focal taxa. Counts of these sequences convey …

Phylogenetic clustering of small low nucleic acid-content bacteria across diverse freshwater ecosystems

CR Proctor, MD Besmer, T Langenegger… - The ISME …, 2018 - academic.oup.com
Here we used flow cytometry (FCM) and filtration paired with amplicon sequencing to
determine the abundance and composition of small low nucleic acid (LNA)-content bacteria …