OncoVar: an integrated database and analysis platform for oncogenic driver variants in cancers

T Wang, S Ruan, X Zhao, X Shi, H Teng… - Nucleic acids …, 2021 - academic.oup.com
The prevalence of neutral mutations in cancer cell population impedes the distinguishing of
cancer-causing driver mutations from passenger mutations. To systematically prioritize the …

Microtia epigenetics: an overview of review and new viewpoint

X Chen, R Zhang - Medicine, 2019 - journals.lww.com
Microtia epigenetics: An overview of review and new viewpoin... : Medicine Microtia
epigenetics: An overview of review and new viewpoint : Medicine Log in or Register Get …

Symphony of epigenetic and metabolic regulation—interaction between the histone methyltransferase EZH2 and metabolism of tumor

T Zhang, Y Gong, H Meng, C Li, L Xue - Clinical Epigenetics, 2020 - Springer
Increasing evidence has suggested that epigenetic and metabolic alterations in cancer cells
are highly intertwined. As the master epigenetic regulator, enhancer of zeste homolog 2 …

Comprehensive evaluation of computational methods for predicting cancer driver genes

X Shi, H Teng, L Shi, W Bi, W Wei… - Briefings in …, 2022 - academic.oup.com
Optimal methods could effectively improve the accuracy of predicting and identifying
candidate driver genes. Various computational methods based on mutational frequency …

Gene4Denovo: an integrated database and analytic platform for de novo mutations in humans

G Zhao, K Li, B Li, Z Wang, Z Fang, X Wang… - Nucleic acids …, 2020 - academic.oup.com
De novo mutations (DNMs) significantly contribute to sporadic diseases, particularly in
neuropsychiatric disorders. Whole-exome sequencing (WES) and whole-genome …

CircleBase: an integrated resource and analysis platform for human eccDNAs

X Zhao, L Shi, S Ruan, W Bi, Y Chen… - Nucleic acids …, 2022 - academic.oup.com
Rapid advances in high-throughput sequencing technologies have led to the discovery of
thousands of extrachromosomal circular DNAs (eccDNAs) in the human genome. Loss-of …

OncoBase: a platform for decoding regulatory somatic mutations in human cancers

X Li, L Shi, Y Wang, J Zhong, X Zhao… - Nucleic Acids …, 2019 - academic.oup.com
Whole-exome and whole-genome sequencing have revealed millions of somatic mutations
associated with different human cancers, and the vast majority of them are located outside of …

[HTML][HTML] Transcriptomic signatures and repurposing drugs for COVID-19 patients: findings of bioinformatics analyses

G Li, S Ruan, X Zhao, Q Liu, Y Dou, F Mao - Computational and Structural …, 2021 - Elsevier
The novel coronavirus SARS-CoV-2 is damaging the world's social and economic fabrics
seriously. Effective drugs are urgently needed to decrease the high mortality rate of COVID …

[PDF][PDF] AI-Driver: an ensemble method for identifying driver mutations in personal cancer genomes

H Wang, T Wang, X Zhao, H Wu, M You… - NAR Genomics and …, 2020 - academic.oup.com
The current challenge in cancer research is to increase the resolution of driver prediction
from gene-level to mutation-level, which is more closely aligned with the goal of precision …

Prevalence and architecture of posttranscriptionally impaired synonymous mutations in 8,320 genomes across 22 cancer types

H Teng, W Wei, Q Li, M Xue, X Shi, X Li… - Nucleic acids …, 2020 - academic.oup.com
Somatic synonymous mutations are one of the most frequent genetic variants occurring in
the coding region of cancer genomes, while their contributions to cancer development …