Substitution models of protein evolution with selection on enzymatic activity

D Ferreiro, R Khalil, SF Sousa… - Molecular Biology and …, 2024 - academic.oup.com
Substitution models of evolution are necessary for diverse evolutionary analyses including
phylogenetic tree and ancestral sequence reconstructions. At the protein level, empirical …

Selection among site-dependent structurally constrained substitution models of protein evolution by approximate Bayesian computation

D Ferreiro, C Branco, M Arenas - Bioinformatics, 2024 - academic.oup.com
Motivation The selection among substitution models of molecular evolution is fundamental
for obtaining accurate phylogenetic inferences. At the protein level, evolutionary analyses …

Multi-conformation Aproach of ENM-NMA Dynamic-Based Descriptors for HIV Drug Resistance Prediction

JA Jimenez-Gari, M Pupo-Meriño, HR Gonzalez… - … Congress on Pattern …, 2023 - Springer
Drug resistance is a key factor in the failure of drug therapy, as the antiretroviral therapy
against the human immunodeficiency virus (HIV). Due to the high costs of direct phenotypic …