Pleiotropy in complex traits: challenges and strategies

N Solovieff, C Cotsapas, PH Lee, SM Purcell… - Nature Reviews …, 2013 - nature.com
Genome-wide association studies have identified many variants that each affects multiple
traits, particularly across autoimmune diseases, cancers and neuropsychiatric disorders …

Computational network biology: data, models, and applications

C Liu, Y Ma, J Zhao, R Nussinov, YC Zhang, F Cheng… - Physics Reports, 2020 - Elsevier
Biological entities are involved in intricate and complex interactions, in which uncovering the
biological information from the network concepts are of great significance. Benefiting from …

Network medicine framework for identifying drug-repurposing opportunities for COVID-19

D Morselli Gysi, Í Do Valle, M Zitnik… - Proceedings of the …, 2021 - National Acad Sciences
The COVID-19 pandemic has highlighted the need to quickly and reliably prioritize clinically
approved compounds for their potential effectiveness for severe acute respiratory syndrome …

Modeling polypharmacy side effects with graph convolutional networks

M Zitnik, M Agrawal, J Leskovec - Bioinformatics, 2018 - academic.oup.com
Motivation The use of drug combinations, termed polypharmacy, is common to treat patients
with complex diseases or co-existing conditions. However, a major consequence of …

[图书][B] Egocentric network analysis: Foundations, methods, and models

BL Perry, BA Pescosolido, SP Borgatti - 2018 - books.google.com
Egocentric network analysis is used widely across the social sciences, especially in
anthropology, political science, economics, and sociology, and is increasingly being …

Uncovering disease-disease relationships through the incomplete interactome

J Menche, A Sharma, M Kitsak, SD Ghiassian, M Vidal… - Science, 2015 - science.org
INTRODUCTION A disease is rarely a straightforward consequence of an abnormality in a
single gene, but rather reflects the interplay of multiple molecular processes. The …

Human symptoms–disease network

XZ Zhou, J Menche, AL Barabási, A Sharma - Nature communications, 2014 - nature.com
In the post-genomic era, the elucidation of the relationship between the molecular origins of
diseases and their resulting phenotypes is a crucial task for medical research. Here, we use …

Network medicine: a network-based approach to human disease

AL Barabási, N Gulbahce, J Loscalzo - Nature reviews genetics, 2011 - nature.com
Given the functional interdependencies between the molecular components in a human cell,
a disease is rarely a consequence of an abnormality in a single gene, but reflects the …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

[HTML][HTML] Interactome networks and human disease

M Vidal, ME Cusick, AL Barabási - Cell, 2011 - cell.com
Complex biological systems and cellular networks may underlie most genotype to
phenotype relationships. Here, we review basic concepts in network biology, discussing …