[HTML][HTML] Nanopore sequencing technology, bioinformatics and applications

Y Wang, Y Zhao, A Bollas, Y Wang, KF Au - Nature biotechnology, 2021 - nature.com
Rapid advances in nanopore technologies for sequencing single long DNA and RNA
molecules have led to substantial improvements in accuracy, read length and throughput …

Long-read human genome sequencing and its applications

GA Logsdon, MR Vollger, EE Eichler - Nature Reviews Genetics, 2020 - nature.com
Over the past decade, long-read, single-molecule DNA sequencing technologies have
emerged as powerful players in genomics. With the ability to generate reads tens to …

Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids

W Gu, X Deng, M Lee, YD Sucu, S Arevalo, D Stryke… - Nature medicine, 2021 - nature.com
We developed a metagenomic next-generation sequencing (mNGS) test using cell-free DNA
from body fluids to identify pathogens. The performance of mNGS testing of 182 body fluids …

[HTML][HTML] Metagenomics-enabled microbial surveillance

KKK Ko, KR Chng, N Nagarajan - Nature Microbiology, 2022 - nature.com
Lessons learnt from the COVID-19 pandemic include increased awareness of the potential
for zoonoses and emerging infectious diseases that can adversely affect human health …

A practical guide to amplicon and metagenomic analysis of microbiome data

YX Liu, Y Qin, T Chen, M Lu, X Qian, X Guo… - Protein & cell, 2021 - academic.oup.com
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …

Co-infections: potentially lethal and unexplored in COVID-19

MJ Cox, N Loman, D Bogaert, J O'Grady - The Lancet Microbe, 2020 - thelancet.com
Respiratory viral infections predispose patients to co-infections and these lead to increased
disease severity and mortality. Most fatalities in the 1918 influenza outbreak were due to …

Readfish enables targeted nanopore sequencing of gigabase-sized genomes

A Payne, N Holmes, T Clarke, R Munro… - Nature …, 2021 - nature.com
Nanopore sequencers can be used to selectively sequence certain DNA molecules in a pool
by reversing the voltage across individual nanopores to reject specific sequences, enabling …

Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes

Y Che, Y Yang, X Xu, K Břinda… - Proceedings of the …, 2021 - National Acad Sciences
It is well established that plasmids play an important role in the dissemination of
antimicrobial resistance (AMR) genes; however, little is known about the role of the …

Droplet Cas12a assay enables DNA quantification from unamplified samples at the single-molecule level

H Yue, B Shu, T Tian, E Xiong, M Huang, D Zhu… - Nano Letters, 2021 - ACS Publications
DNA quantification is important for biomedical research, but the routinely used techniques
rely on nucleic acid amplification which have inherent issues like cross-contamination risk …

Ultrasensitive multichannel immunochromatographic assay for rapid detection of foodborne bacteria based on two-dimensional film-like SERS labels

W Shen, C Wang, S Zheng, B Jiang, J Li, Y Pang… - Journal of Hazardous …, 2022 - Elsevier
Rapid and sensitive detection of multiple foodborne bacteria without DNA amplification is
still challenging. Here, we proposed an immunochromatographic assay (ICA) with multiplex …