Human kidney organoids: progress and remaining challenges

R Nishinakamura - Nature Reviews Nephrology, 2019 - nature.com
Kidney organoids are regarded as important tools with which to study the development of
the normal and diseased human kidney. Since the first reports of human pluripotent stem …

Tools for the analysis of high-dimensional single-cell RNA sequencing data

Y Wu, K Zhang - Nature Reviews Nephrology, 2020 - nature.com
Breakthroughs in the development of high-throughput technologies for profiling
transcriptomes at the single-cell level have helped biologists to understand the …

The transcriptional and regulatory identity of erythropoietin producing cells

BK Kragesteen, A Giladi, E David, S Halevi… - Nature medicine, 2023 - nature.com
Erythropoietin (Epo) is the master regulator of erythropoiesis and oxygen homeostasis.
Despite its physiological importance, the molecular and genomic contexts of the cells …

Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows

E Denisenko, BB Guo, M Jones, R Hou, L De Kock… - Genome biology, 2020 - Springer
Background Single-cell RNA sequencing has been widely adopted to estimate the cellular
composition of heterogeneous tissues and obtain transcriptional profiles of individual cells …

[PDF][PDF] Single-cell profiling reveals sex, lineage, and regional diversity in the mouse kidney

A Ransick, NO Lindström, J Liu, Q Zhu, JJ Guo… - Developmental cell, 2019 - cell.com
Chronic kidney disease affects 10% of the population with notable differences in ethnic and
sex-related susceptibility to kidney injury and disease. Kidney dysfunction leads to …

[HTML][HTML] Integration of spatial and single-cell transcriptomics localizes epithelial cell–immune cross-talk in kidney injury

RM Ferreira, AR Sabo, S Winfree, KS Collins… - JCI insight, 2021 - ncbi.nlm.nih.gov
Single-cell sequencing studies have characterized the transcriptomic signature of cell types
within the kidney. However, the spatial distribution of acute kidney injury (AKI) is regional …

Single-cell profiling of AKI in a murine model reveals novel transcriptional signatures, profibrotic phenotype, and epithelial-to-stromal crosstalk

V Rudman-Melnick, M Adam, A Potter… - Journal of the …, 2020 - journals.lww.com
Background Current management of AKI, a potentially fatal disorder that can also initiate or
exacerbate CKD, is merely supportive. Therefore, deeper understanding of the molecular …

Ferroptotic stress promotes the accumulation of pro-inflammatory proximal tubular cells in maladaptive renal repair

S Ide, Y Kobayashi, K Ide, SA Strausser, K Abe… - Elife, 2021 - elifesciences.org
Overwhelming lipid peroxidation induces ferroptotic stress and ferroptosis, a nonapoptotic
form of regulated cell death that has been implicated in maladaptive renal repair in mice and …

[PDF][PDF] Plasticity of distal nephron epithelia from human kidney organoids enables the induction of ureteric tip and stalk

SE Howden, SB Wilson, E Groenewegen, L Starks… - Cell Stem Cell, 2021 - cell.com
During development, distinct progenitors contribute to the nephrons versus the ureteric
epithelium of the kidney. Indeed, previous human pluripotent stem-cell-derived models of …

Only hyperuricemia with crystalluria, but not asymptomatic hyperuricemia, drives progression of chronic kidney disease

M Sellmayr, MRH Petzsche, Q Ma… - Journal of the …, 2020 - journals.lww.com
Background The roles of asymptomatic hyperuricemia or uric acid (UA) crystals in CKD
progression are unknown. Hypotheses to explain links between UA deposition and …