Methods and applications for single-cell and spatial multi-omics

K Vandereyken, A Sifrim, B Thienpont… - Nature Reviews Genetics, 2023 - nature.com
The joint analysis of the genome, epigenome, transcriptome, proteome and/or metabolome
from single cells is transforming our understanding of cell biology in health and disease. In …

Characterizing cis-regulatory elements using single-cell epigenomics

S Preissl, KJ Gaulton, B Ren - Nature Reviews Genetics, 2023 - nature.com
Cell type-specific gene expression patterns and dynamics during development or in disease
are controlled by cis-regulatory elements (CREs), such as promoters and enhancers …

Comparative cellular analysis of motor cortex in human, marmoset and mouse

TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian… - Nature, 2021 - nature.com
The primary motor cortex (M1) is essential for voluntary fine-motor control and is functionally
conserved across mammals. Here, using high-throughput transcriptomic and epigenomic …

An atlas of healthy and injured cell states and niches in the human kidney

BB Lake, R Menon, S Winfree, Q Hu, R Melo Ferreira… - Nature, 2023 - nature.com
Understanding kidney disease relies on defining the complexity of cell types and states, their
associated molecular profiles and interactions within tissue neighbourhoods. Here we …

Mapping human tissues with highly multiplexed RNA in situ hybridization

K Kalhor, CJ Chen, HS Lee, M Cai, M Nafisi… - Nature …, 2024 - nature.com
In situ transcriptomic techniques promise a holistic view of tissue organization and cell-cell
interactions. There has been a surge of multiplexed RNA in situ mapping techniques but …

[HTML][HTML] Single-cell multiplex chromatin and RNA interactions in ageing human brain

X Wen, Z Luo, W Zhao, R Calandrelli, TC Nguyen… - Nature, 2024 - nature.com
Dynamically organized chromatin complexes often involve multiplex chromatin interactions
and sometimes chromatin-associated RNA,–. Chromatin complex compositions change …

High-throughput microfluidic droplets in biomolecular analytical system: A review

L Zhang, R Parvin, M Chen, D Hu, Q Fan… - Biosensors and …, 2023 - Elsevier
Droplet microfluidic technology has revolutionized biomolecular analytical research, as it
has the capability to reserve the genotype-to-phenotype linkage and assist for revealing the …

Progress in single-cell multimodal sequencing and multi-omics data integration

X Wang, X Wu, N Hong, W Jin - Biophysical Reviews, 2024 - Springer
With the rapid advance of single-cell sequencing technology, cell heterogeneity in various
biological processes was dissected at different omics levels. However, single-cell mono …

Single-cell sequencing technology applied to epigenetics for the study of tumor heterogeneity

Y Hu, F Shen, X Yang, T Han, Z Long, J Wen… - Clinical …, 2023 - Springer
Background Previous studies have traditionally attributed the initiation of cancer cells to
genetic mutations, considering them as the fundamental drivers of carcinogenesis. However …

Epigenetic control of microglial immune responses

R Scholz, D Brösamle, X Yuan, M Beyer… - Immunological …, 2024 - Wiley Online Library
Microglia, the major population of brain‐resident macrophages, are now recognized as a
heterogeneous population comprising several cell subtypes with different (so far mostly …