RNA-binding proteins in human genetic disease

F Gebauer, T Schwarzl, J Valcárcel… - Nature Reviews …, 2021 - nature.com
RNA-binding proteins (RBPs) are critical effectors of gene expression, and as such their
malfunction underlies the origin of many diseases. RBPs can recognize hundreds of …

Properties of stress granule and P-body proteomes

JY Youn, BJA Dyakov, J Zhang, JDR Knight… - Molecular cell, 2019 - cell.com
Stress granules and P-bodies are cytosolic biomolecular condensates that dynamically form
by the phase separation of RNAs and proteins. They participate in translational control and …

Molecular mechanisms driving mRNA degradation by m6A modification

Y Lee, J Choe, OH Park, YK Kim - Trends in Genetics, 2020 - cell.com
N 6-Methyladenosine (m 6 A), the most prevalent internal modification associated with
eukaryotic mRNAs, influences many steps of mRNA metabolism, including splicing, export …

Methods to study RNA–protein interactions

M Ramanathan, DF Porter, PA Khavari - Nature methods, 2019 - nature.com
Noncoding RNA sequences, including long noncoding RNAs, small nucleolar RNAs, and
untranslated mRNA regions, accomplish many of their diverse functions through direct …

G-Quadruplexes in RNA biology: recent advances and future directions

L Dumas, P Herviou, E Dassi, A Cammas… - Trends in Biochemical …, 2021 - cell.com
RNA G-quadruplexes (RG4s) are four-stranded structures known to control gene expression
mechanisms, from transcription to protein synthesis, and DNA-related processes. Their …

Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica

J Hör, G Matera, J Vogel, S Gottesman, G Storz - EcoSal Plus, 2020 - Am Soc Microbiol
The last few decades have led to an explosion in our understanding of the major roles that
small regulatory RNAs (sRNAs) play in regulatory circuits and the responses to stress in …

Spatiotemporally-resolved mapping of RNA binding proteins via functional proximity labeling reveals a mitochondrial mRNA anchor promoting stress recovery

W Qin, SA Myers, DK Carey, SA Carr, AY Ting - Nature communications, 2021 - nature.com
Proximity labeling (PL) with genetically-targeted promiscuous enzymes has emerged as a
powerful tool for unbiased proteome discovery. By combining the spatiotemporal specificity …

Signal-noise metrics for RNA binding protein identification reveal broad spectrum protein-RNA interaction frequencies and dynamics

JC Kristofich, CV Nicchitta - Nature Communications, 2023 - nature.com
Recent efforts towards the comprehensive identification of RNA-bound proteomes have
revealed a large, surprisingly diverse family of candidate RNA-binding proteins (RBPs) …

CRISPR-assisted detection of RNA–protein interactions in living cells

W Yi, J Li, X Zhu, X Wang, L Fan, W Sun, L Liao… - Nature …, 2020 - nature.com
We have developed CRISPR-assisted RNA–protein interaction detection method (CARPID),
which leverages CRISPR–CasRx-based RNA targeting and proximity labeling to identify …

RNA-binding proteins and their role in kidney disease

L Seufert, T Benzing, M Ignarski… - Nature Reviews …, 2022 - nature.com
RNA-binding proteins (RBPs) are of fundamental importance for post-transcriptional gene
regulation and protein synthesis. They are required for pre-mRNA processing and for RNA …