Topological feature extraction and visualization of whole slide images using graph neural networks

J Levy, C Haudenschild, C Barwick… - … 2021: Proceedings of …, 2020 - World Scientific
Whole-slide images (WSI) are digitized representations of thin sections of stained tissue
from various patient sources (biopsy, resection, exfoliation, fluid) and often exceed 100,000 …

A large-scale internal validation study of unsupervised virtual trichrome staining technologies on nonalcoholic steatohepatitis liver biopsies

JJ Levy, N Azizgolshani, MJ Andersen Jr… - Modern …, 2021 - nature.com
Non-alcoholic steatohepatitis (NASH) is a fatty liver disease characterized by accumulation
of fat in hepatocytes with concurrent inflammation and is associated with morbidity, cirrhosis …

Robust quad-tree based registration on whole slide images

C Marzahl, F Wilm, L Tharun, S Perner… - MICCAI Workshop …, 2021 - proceedings.mlr.press
The registration of whole slide images (WSIs) provides the basis for many subsequent
processing steps in digital pathology. For instance, the registration of immunohistochemistry …

Valis: virtual alignment of pathology image series

CD Gatenbee, AM Baker, S Prabhakaran, RJC Slebos… - bioRxiv, 2021 - biorxiv.org
Spatial analyses can reveal important interactions between and among cells and their
microenvironment. However, most existing staining methods are limited to a handful of …

Artificial intelligence in anatomic pathology

JJ Levy, LJ Vaickus - Advances in …, 2021 - advancesinmolecularpathology.com
Board-certified anatomic pathologists spend years developing domain-specific visual skills
and heuristics, which allow them to efficiently (both temporally and mentally) detect and …

Artificial intelligence and deep learning in molecular testing

J Levy, L Vaickus - Diagnostic Molecular Pathology, 2024 - Elsevier
The sheer amount of information available from increasingly complex data modalities has
increased the potential for discovering novel therapeutics and decision aids that can assist …

[PDF][PDF] Translating AI to Digital Pathology Workflow: Dealing with Scarce Data and High Variation by Minimising Complexities in Data and Model

GTUV Somaratne - 2021 - researchportal.murdoch.edu.au
The recent conversion to digital pathology using Whole Slide Images (WSIs) from
conventional pathology opened the doors for Artificial Intelligence (AI) in pathology …