Phylogenomics and the flowering plant tree of life
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …
technologies continue to provide an impetus for plant phylogenetic study. In the past …
Long-read sequencing to understand genome biology and cell function
Determining the sequence of DNA and RNA molecules has a huge impact on the
understanding of cell biology and function. Recent advancements in next-generation short …
understanding of cell biology and function. Recent advancements in next-generation short …
Chloroplast genomes of four Carex species: Long repetitive sequences trigger dramatic changes in chloroplast genome structure
S Xu, K Teng, H Zhang, K Gao, J Wu, L Duan… - Frontiers in Plant …, 2023 - frontiersin.org
The chloroplast genomes of angiosperms usually have a stable circular quadripartite
structure that exhibits high consistency in genome size and gene order. As one of the most …
structure that exhibits high consistency in genome size and gene order. As one of the most …
A genome resource for Acacia, Australia's largest plant genus
Acacia (Leguminosae, Caesalpinioideae, mimosoid clade) is the largest and most
widespread genus of plants in the Australian flora, occupying and dominating a diverse …
widespread genus of plants in the Australian flora, occupying and dominating a diverse …
Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae
Background Massive parallel sequencing technologies have enabled the elucidation of
plant phylogenetic relationships from chloroplast genomes at a high pace. These include …
plant phylogenetic relationships from chloroplast genomes at a high pace. These include …
Plastid genome assembly using long‐read data
Although plastid genome (plastome) structure is highly conserved across most seed plants,
investigations during the past two decades have revealed several disparately related …
investigations during the past two decades have revealed several disparately related …
Use of Oxford Nanopore MinION to generate full-length sequences of the Blastocystis small subunit (SSU) rRNA gene
Background Blastocystis sp. is one of the most common enteric parasites of humans and
animals worldwide. It is well recognized that this ubiquitous protist displays a remarkable …
animals worldwide. It is well recognized that this ubiquitous protist displays a remarkable …
Comparative and phylogenetic analyses of the chloroplast genome reveal the taxonomy of the Morus genus
Q Zeng, M Chen, S Wang, X Xu, T Li, Z Xiang… - Frontiers in Plant …, 2022 - frontiersin.org
Mulberry (genus Morus) is an economically important woody plant with an altered ploidy
level. The variable number of Morus species recognized by different studies indicates that …
level. The variable number of Morus species recognized by different studies indicates that …
Yes, we can use it: a formal test on the accuracy of low-pass nanopore long-read sequencing for mitophylogenomics and barcoding research using the Caribbean …
JA Baeza - BMC genomics, 2020 - Springer
Background Whole mitogenomes or short fragments (ie, 300–700 bp of the cox1 gene) are
the markers of choice for revealing within-and among-species genealogies. Protocols for …
the markers of choice for revealing within-and among-species genealogies. Protocols for …
A comparative analysis of plastome evolution in autotrophic Piperales
Premise Many plastomes of autotrophic Piperales have been reported to date, describing a
variety of differences. Most studies focused only on a few species or a single genus, and …
variety of differences. Most studies focused only on a few species or a single genus, and …