Mechanisms of oncogene-induced replication stress: jigsaw falling into place

P Kotsantis, E Petermann, SJ Boulton - Cancer discovery, 2018 - AACR
Oncogene activation disturbs cellular processes and accommodates a complex landscape
of changes in the genome that contribute to genomic instability, which accelerates mutation …

Transcription–replication conflicts: how they occur and how they are resolved

T García-Muse, A Aguilera - Nature reviews Molecular cell biology, 2016 - nature.com
The frequent occurrence of transcription and DNA replication in cells results in many
encounters, and thus conflicts, between the transcription and replication machineries. These …

Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites

A Promonet, I Padioleau, Y Liu, L Sanz… - Nature …, 2020 - nature.com
R-loops have both positive and negative impacts on chromosome functions. To identify toxic
R-loops in the human genome, here, we map RNA: DNA hybrids, replication stress markers …

Conflict resolution in the genome: how transcription and replication make it work

S Hamperl, KA Cimprich - Cell, 2016 - cell.com
The complex machineries involved in replication and transcription translocate along the
same DNA template, often in opposing directions and at different rates. These processes …

A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress

CTY Chan, M Dyavaiah, MS DeMott… - PLoS …, 2010 - journals.plos.org
Decades of study have revealed more than 100 ribonucleoside structures incorporated as
post-transcriptional modifications mainly in tRNA and rRNA, yet the larger functional …

The La and related RNA‐binding proteins (LARPs): structures, functions, and evolving perspectives

RJ Maraia, S Mattijssen… - Wiley Interdisciplinary …, 2017 - Wiley Online Library
La was first identified as a polypeptide component of ribonucleic protein complexes targeted
by antibodies in autoimmune patients and is now known to be a eukaryote cell‐ubiquitous …

[HTML][HTML] The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores

R Bermejo, T Capra, R Jossen, A Colosio, C Frattini… - Cell, 2011 - cell.com
Transcription hinders replication fork progression and stability, and the Mec1/ATR
checkpoint protects fork integrity. Examining checkpoint-dependent mechanisms controlling …

Transcription as a threat to genome integrity

H Gaillard, A Aguilera - Annual review of biochemistry, 2016 - annualreviews.org
Genomes undergo different types of sporadic alterations, including DNA damage, point
mutations, and genome rearrangements, that constitute the basis for evolution. However …

Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress

J Poli, CB Gerhold, A Tosi, N Hustedt… - Genes & …, 2016 - genesdev.cshlp.org
Little is known about how cells ensure DNA replication in the face of RNA polymerase II
(RNAPII)-mediated transcription, especially under conditions of replicative stress. Here we …

RNA polymerase III advances: structural and tRNA functional views

AG Arimbasseri, RJ Maraia - Trends in biochemical sciences, 2016 - cell.com
RNA synthesis in eukaryotes is divided among three RNA polymerases (RNAPs). RNAP III
transcribes hundreds of tRNA genes and fewer additional short RNA genes. We survey …