A transdisciplinary review of deep learning research and its relevance for water resources scientists

C Shen - Water Resources Research, 2018 - Wiley Online Library
Deep learning (DL), a new generation of artificial neural network research, has transformed
industries, daily lives, and various scientific disciplines in recent years. DL represents …

Co-expression networks for plant biology: why and how

X Rao, RA Dixon - Acta biochimica et biophysica Sinica, 2019 - academic.oup.com
Co-expression network analysis is one of the most powerful approaches for interpretation of
large transcriptomic datasets. It enables characterization of modules of co-expressed genes …

Gene co-expression analysis for functional classification and gene–disease predictions

S Van Dam, U Vosa, A van der Graaf… - Briefings in …, 2018 - academic.oup.com
Gene co-expression networks can be used to associate genes of unknown function with
biological processes, to prioritize candidate disease genes or to discern transcriptional …

A systematic comparative evaluation of biclustering techniques

VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …

[HTML][HTML] An unsupervised machine learning method for discovering patient clusters based on genetic signatures

C Lopez, S Tucker, T Salameh, C Tucker - Journal of biomedical informatics, 2018 - Elsevier
Introduction Many chronic disorders have genomic etiology, disease progression, clinical
presentation, and response to treatment that vary on a patient-to-patient basis. Such …

[HTML][HTML] An unsupervised machine learning model for discovering latent infectious diseases using social media data

S Lim, CS Tucker, S Kumara - Journal of biomedical informatics, 2017 - Elsevier
Introduction The authors of this work propose an unsupervised machine learning model that
has the ability to identify real-world latent infectious diseases by mining social media data. In …

Auto-weighted multi-view co-clustering with bipartite graphs

S Huang, Z Xu, IW Tsang, Z Kang - Information Sciences, 2020 - Elsevier
Co-clustering aims to explore coherent patterns by simultaneously clustering samples and
features of data. Several co-clustering methods have been proposed in the past decades …

Metaheuristic Biclustering Algorithms: From State-of-the-Art to Future Opportunities

A José-García, J Jacques, V Sobanski… - ACM Computing …, 2023 - dl.acm.org
Biclustering is an unsupervised machine-learning technique that simultaneously clusters
rows and columns in a data matrix. Over the past two decades, the field of biclustering has …

Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer

DD Bhuva, J Cursons, GK Smyth, MJ Davis - Genome biology, 2019 - Springer
Background Elucidation of regulatory networks, including identification of regulatory
mechanisms specific to a given biological context, is a key aim in systems biology. This has …

Biclustering fMRI time series: a comparative study

EN Castanho, H Aidos, SC Madeira - BMC bioinformatics, 2022 - Springer
Background The effectiveness of biclustering, simultaneous clustering of rows and columns
in a data matrix, was shown in gene expression data analysis. Several researchers …