Comparing deep learning and concept extraction based methods for patient phenotyping from clinical narratives

S Gehrmann, F Dernoncourt, Y Li, ET Carlson, JT Wu… - PloS one, 2018 - journals.plos.org
In secondary analysis of electronic health records, a crucial task consists in correctly
identifying the patient cohort under investigation. In many cases, the most valuable and …

GatorTron: a large clinical language model to unlock patient information from unstructured electronic health records

X Yang, A Chen, N PourNejatian, HC Shin… - arXiv preprint arXiv …, 2022 - arxiv.org
There is an increasing interest in developing artificial intelligence (AI) systems to process
and interpret electronic health records (EHRs). Natural language processing (NLP) powered …

A large language model for electronic health records

X Yang, A Chen, N PourNejatian, HC Shin… - NPJ digital …, 2022 - nature.com
There is an increasing interest in developing artificial intelligence (AI) systems to process
and interpret electronic health records (EHRs). Natural language processing (NLP) powered …

[HTML][HTML] Enhancing clinical concept extraction with distributional semantics

S Jonnalagadda, T Cohen, S Wu… - Journal of biomedical …, 2012 - Elsevier
Extracting concepts (such as drugs, symptoms, and diagnoses) from clinical narratives
constitutes a basic enabling technology to unlock the knowledge within and support more …

Combining deep learning with token selection for patient phenotyping from electronic health records

Z Yang, M Dehmer, O Yli-Harja, F Emmert-Streib - Scientific reports, 2020 - nature.com
Artificial intelligence provides the opportunity to reveal important information buried in large
amounts of complex data. Electronic health records (eHRs) are a source of such big data …

Med7: A transferable clinical natural language processing model for electronic health records

A Kormilitzin, N Vaci, Q Liu… - Artificial Intelligence in …, 2021 - Elsevier
Electronic health record systems are ubiquitous and the majority of patients' data are now
being collected electronically in the form of free text. Deep learning has significantly …

Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources

S Yu, KP Liao, SY Shaw, VS Gainer… - Journal of the …, 2015 - academic.oup.com
Objective Analysis of narrative (text) data from electronic health records (EHRs) can improve
population-scale phenotyping for clinical and genetic research. Currently, selection of text …

A review of automatic phenotyping approaches using electronic health records

H Alzoubi, R Alzubi, N Ramzan, D West, T Al-Hadhrami… - Electronics, 2019 - mdpi.com
Electronic Health Records (EHR) are a rich repository of valuable clinical information that
exist in primary and secondary care databases. In order to utilize EHRs for medical …

Natural language processing in electronic health records in relation to healthcare decision-making: a systematic review

E Hossain, R Rana, N Higgins, J Soar, PD Barua… - Computers in Biology …, 2023 - Elsevier
Abstract Background: Natural Language Processing (NLP) is widely used to extract clinical
insights from Electronic Health Records (EHRs). However, the lack of annotated data …

Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach

WH Weng, KB Wagholikar, AT McCray… - BMC medical informatics …, 2017 - Springer
Background The medical subdomain of a clinical note, such as cardiology or neurology, is
useful content-derived metadata for developing machine learning downstream applications …