A main bottleneck in proteomics is the downstream biological analysis of highly multivariate
quantitative protein abundance data generated using mass-spectrometry-based analysis …

Mass spectrometry-based proteomics is a continuously growing field marked by
technological and methodological improvements. Cancer proteomics is aimed at pursuing …

Mass spectrometry-based proteomics has had a formidable development in recent years,
increasing the amount of data handled and the complexity of the statistical resources …

Remarkable advances in quantitative mass spectrometry have shifted the focus of
proteomics from the characterization of protein expression profiles to detailed investigations …

Here we present the Coon OMSSA Proteomic Analysis Software Suite (COMPASS): a free
and open‐source software pipeline for high‐throughput analysis of proteomics data …

Recent technological advances have made it possible to identify and quantify thousands of
proteins in a single proteomics experiment. As a result of these developments, the analysis …

pyOpenMS is an open‐source, Python‐based interface to the C++ OpenMS library,
providing facile access to a feature‐rich, open‐source algorithm library for MS‐based …

Motivation: The size and complex nature of mass spectrometry-based proteomics datasets
motivate development of specialized software for statistical data analysis and exploration …

In this Perspective, we discuss developments in mass-spectrometry-based proteomic
technology over the past decade from the viewpoint of our laboratory. We also reflect on …

Proteomics has made tremendous progress, attaining throughput and comprehensiveness
so far only seen in genomics technologies. The consequent avalanche of proteome level …