Mutation pressure, drift, and the pace of molecular coevolution

M Lynch - Proceedings of the National Academy of …, 2023 - National Acad Sciences
Most aspects of the molecular biology of cells involve tightly coordinated intermolecular
interactions requiring specific recognition at the nucleotide and/or amino acid levels. This …

Effects of linkage on rates of molecular evolution.

CW Birky Jr, JB Walsh - Proceedings of the National …, 1988 - National Acad Sciences
When an advantageous mutation is fixed in a population by selection, a closely linked
selectively neutral or mildly detrimental mutation may" hitchhike" to fixation along with it. It …

The role of coevolution

JN Thompson - Science, 2012 - science.org
One of the great metaphors of evolutionary biology, introduced by Sewall Wright, is that
populations evolve toward adaptive peaks separated by adaptive valleys. The peaks are …

Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences

C Knibbe, O Mazet, F Chaudier, JM Fayard… - Journal of Theoretical …, 2007 - Elsevier
The phenotypic effects of random mutations depend on both the architecture of the genome
and the gene–trait relationships. Both levels thus play a key role in the mutational variability …

Evolution in changing environments: Modifiers of mutation, recombination, and migration

O Carja, U Liberman… - Proceedings of the …, 2014 - National Acad Sciences
The production and maintenance of genetic and phenotypic diversity under temporally
fluctuating selection and the signatures of environmental changes in the patterns of this …

On the conservative nature of intragenic recombination

DA Drummond, JJ Silberg, MM Meyer… - Proceedings of the …, 2005 - National Acad Sciences
Intragenic recombination rapidly creates protein sequence diversity compared with random
mutation, but little is known about the relative effects of recombination and mutation on …

Neutral and nonneutral mutations: the creative mix—evolution of complexity in gene interaction systems

E ZuckerkandI - Journal of Molecular Evolution, 1997 - Springer
Random drift, while indifferent to the functionality of the molecular features on which it acts,
may nevertheless affect evolving molecular mechanisms. It can lead to functional novelty in …

The repatterning of eukaryotic genomes by random genetic drift

M Lynch, LM Bobay, F Catania… - Annual review of …, 2011 - annualreviews.org
Recent observations on rates of mutation, recombination, and random genetic drift highlight
the dramatic ways in which fundamental evolutionary processes vary across the divide …

Genetic diversity and the structure of genealogies in rapidly adapting populations

MM Desai, AM Walczak, DS Fisher - Genetics, 2013 - academic.oup.com
Positive selection distorts the structure of genealogies and hence alters patterns of genetic
variation within a population. Most analyses of these distortions focus on the signatures of …

Evolutionary meandering of intermolecular interactions along the drift barrier

M Lynch, K Hagner - … of the National Academy of Sciences, 2015 - National Acad Sciences
Many cellular functions depend on highly specific intermolecular interactions, for example
transcription factors and their DNA binding sites, microRNAs and their RNA binding sites …