Single-cell RNA sequencing for the study of development, physiology and disease

SS Potter - Nature Reviews Nephrology, 2018 - nature.com
An ongoing technological revolution is continually improving our ability to carry out very high-
resolution studies of gene expression patterns. Current technology enables the global gene …

Defining the variety of cell types in developing and adult human kidneys by single-cell RNA sequencing

A Schumacher, MB Rookmaaker, JA Joles… - NPJ Regenerative …, 2021 - nature.com
The kidney is among the most complex organs in terms of the variety of cell types. The
cellular complexity of human kidneys is not fully unraveled and this challenge is further …

Tools for the analysis of high-dimensional single-cell RNA sequencing data

Y Wu, K Zhang - Nature Reviews Nephrology, 2020 - nature.com
Breakthroughs in the development of high-throughput technologies for profiling
transcriptomes at the single-cell level have helped biologists to understand the …

Renal-tubule epithelial cell nomenclature for single-cell RNA-sequencing studies

L Chen, JZ Clark, JW Nelson, B Kaissling… - Journal of the …, 2019 - journals.lww.com
The assignment of cell type names to individual cell clusters in single-cell RNA-sequencing
(RNA-seq; including single-nucleus RNA-seq) studies is a critical bioinformatic step …

Mapping the human kidney using single-cell genomics

F Schreibing, R Kramann - Nature Reviews Nephrology, 2022 - nature.com
The field of single-cell genomics and spatial technologies is rapidly evolving and has
already provided unprecedented insights into complex tissues. Major advances have been …

[HTML][HTML] The promise of single-cell RNA sequencing for kidney disease investigation

H Wu, BD Humphreys - Kidney international, 2017 - Elsevier
Recent techniques for single-cell RNA sequencing (scRNA-seq) at high throughput are
leading to profound new discoveries in biology. The ability to generate vast amounts of …

[HTML][HTML] Representation and relative abundance of cell-type selective markers in whole-kidney RNA-Seq data

JZ Clark, L Chen, CL Chou, HJ Jung, JW Lee… - Kidney international, 2019 - Elsevier
Bulk-tissue RNA-Seq is increasingly being used in the study of physiological and
pathophysiological processes in the kidney; however, the presence of multiple cell types in …

[HTML][HTML] Understanding the kidney one cell at a time

J Park, CL Liu, J Kim, K Susztak - Kidney international, 2019 - Elsevier
A revolution in cellular measurement technology is underway. Whereas prior studies have
been able to analyze only the averaged outputs from renal tissue, we now can accurately …

Single-cell RNA sequencing reveals the mesangial identity and species diversity of glomerular cell transcriptomes

B He, P Chen, S Zambrano, D Dabaghie, Y Hu… - Nature …, 2021 - nature.com
Molecular characterization of the individual cell types in human kidney as well as model
organisms are critical in defining organ function and understanding translational aspects of …

A single-cell transcriptome atlas of the mouse glomerulus

N Karaiskos, M Rahmatollahi… - Journal of the …, 2018 - journals.lww.com
Background Three different cell types constitute the glomerular filter: mesangial cells,
endothelial cells, and podocytes. However, to what extent cellular heterogeneity exists …