TopoBARTMAP: Biclustering ARTMAP with or without topological methods in a blood cancer case study

R Yelugam, LEB da Silva… - 2020 International Joint …, 2020 - ieeexplore.ieee.org
Biclustering is a special case of subspace clustering that has become viable in several
domains. Particularly, in genomic data analysis, biclustering has been used to identify …

Topological biclustering ARTMAP for identifying within bicluster relationships

R Yelugam, LEB da Silva, DC Wunsch II - Neural Networks, 2023 - Elsevier
Biclustering is a powerful tool for exploratory data analysis in domains such as social
networking, data reduction, and differential gene expression studies. Topological learning …

BARTMAP: A viable structure for biclustering

R Xu, DC Wunsch II - Neural Networks, 2011 - Elsevier
Clustering has been used extensively in the analysis of high-throughput messenger RNA
(mRNA) expression profiling with microarrays. Furthermore, clustering has proven elemental …

BiCoN: network-constrained biclustering of patients and omics data

O Lazareva, S Canzar, K Yuan, J Baumbach… - …, 2021 - academic.oup.com
Motivation Unsupervised learning approaches are frequently used to stratify patients into
clinically relevant subgroups and to identify biomarkers such as disease-associated genes …

It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data

J Xie, A Ma, A Fennell, Q Ma, J Zhao - Briefings in bioinformatics, 2019 - academic.oup.com
Biclustering is a powerful data mining technique that allows clustering of rows and columns,
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …

Towards a unified taxonomy of biclustering methods

DI Ignatov, BW Watson - arXiv preprint arXiv:1702.05376, 2017 - arxiv.org
Being an unsupervised machine learning and data mining technique, biclustering and its
multimodal extensions are becoming popular tools for analysing object-attribute data in …

RUBic: rapid unsupervised biclustering

BK Sriwastava, AK Halder, S Basu, T Chakraborti - BMC bioinformatics, 2023 - Springer
Biclustering of biologically meaningful binary information is essential in many applications
related to drug discovery, like protein–protein interactions and gene expressions. However …

Network-aided bi-clustering for discovering cancer subtypes

G Yu, X Yu, J Wang - Scientific reports, 2017 - nature.com
Bi-clustering is a widely used data mining technique for analyzing gene expression data. It
simultaneously groups genes and samples of an input gene expression data matrix to …

Mutually exclusive spectral biclustering and its applications in cancer subtyping

F Liu, Y Yang, XS Xu, M Yuan - bioRxiv, 2022 - biorxiv.org
Many soft biclustering algorithms have been developed and applied to various biological
and biomedical data analyses. However, until now, few mutually exclusive (hard) …

Popbic: pathway-based order preserving biclustering algorithm towards the analysis of gene expression data

K Mandal, R Sarmah… - IEEE/ACM Transactions …, 2020 - ieeexplore.ieee.org
To understand the underlying biological mechanisms of gene expression data, it is important
to discover the groups of genes that have similar expression patterns under certain subsets …