Genome-wide methylation data mirror ancestry information

E Rahmani, L Shenhav, R Schweiger, P Yousefi… - Epigenetics & …, 2017 - Springer
Background Genetic data are known to harbor information about human demographics, and
genotyping data are commonly used for capturing ancestry information by leveraging …

Incorporating local ancestry improves identification of ancestry-associated methylation signatures and meQTLs in African Americans

B Li, BE Aouizerat, Y Cheng, K Anastos… - Communications …, 2022 - nature.com
Here we report three epigenome-wide association studies (EWAS) of DNA methylation on
self-reported race, global genetic ancestry, and local genetic ancestry in admixed Americans …

EWAS Data Hub: a resource of DNA methylation array data and metadata

Z Xiong, M Li, F Yang, Y Ma, J Sang, R Li… - Nucleic Acids …, 2020 - academic.oup.com
Abstract Epigenome-Wide Association Study (EWAS) has become an effective strategy to
explore epigenetic basis of complex traits. Over the past decade, a large amount of …

GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data

E Rahmani, R Yedidim, L Shenhav, R Schweiger… - …, 2017 - academic.oup.com
GLINT is a user-friendly command-line toolset for fast analysis of genome-wide DNA
methylation data generated using the Illumina human methylation arrays. GLINT, which …

Analysing and interpreting DNA methylation data

C Bock - Nature Reviews Genetics, 2012 - nature.com
DNA methylation is an epigenetic mark that has suspected regulatory roles in a broad range
of biological processes and diseases. The technology is now available for studying DNA …

Methods in DNA methylation profiling

T Zuo, B Tycko, TM Liu, HJL Lin, THM Huang - Epigenomics, 2009 - Taylor & Francis
Metastable and somatically heritable patterns of DNA methylation provide an important level
of genomic regulation. In this article, we review methods for analyzing these genome-wide …

Genome-scale DNA methylation analysis

SD Fouse, RP Nagarajan, JF Costello - Epigenomics, 2010 - Taylor & Francis
The haploid human genome contains approximately 29 million CpGs that exist in a
methylated, hydroxymethylated or unmethylated state, collectively referred to as the DNA …

Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping

C Bock, J Walter, M Paulsen… - Nucleic acids research, 2008 - academic.oup.com
Genomic DNA methylation profiles exhibit substantial variation within the human population,
with important functional implications for gene regulation. So far little is known about the …

Genome‐wide DNA methylation profiling

M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
DNA methylation plays a critical role in the regulation of gene expression. The ability to
access the methylation status for a large number of genes or the entire genome should …

MethLAB: a graphical user interface package for the analysis of array-based DNA methylation data

V Kilaru, RT Barfield, JW Schroeder, AK Smith… - Epigenetics, 2012 - Taylor & Francis
Recent evidence suggests that DNA methylation changes may underlie numerous complex
traits and diseases. The advent of commercial, array-based methods to interrogate DNA …