[HTML][HTML] RegWSI: Whole slide image registration using combined deep feature-and intensity-based methods: Winner of the ACROBAT 2023 challenge
Background and objective The automatic registration of differently stained whole slide
images (WSIs) is crucial for improving diagnosis and prognosis by fusing complementary …
images (WSIs) is crucial for improving diagnosis and prognosis by fusing complementary …
DeepHistReg: Unsupervised deep learning registration framework for differently stained histology samples
M Wodzinski, H Müller - Computer methods and programs in biomedicine, 2021 - Elsevier
Background and objective The use of several stains during histology sample preparation
can be useful for fusing complementary information about different tissue structures. It …
can be useful for fusing complementary information about different tissue structures. It …
Pathflow-mixmatch for whole slide image registration: An investigation of a segment-based scalable image registration method
JJ Levy, CR Jackson, CC Haudenschild… - bioRxiv, 2020 - biorxiv.org
Image registration involves finding the best alignment between different images of the same
object. In these tasks, the object in question is viewed differently in each of the images (eg …
object. In these tasks, the object in question is viewed differently in each of the images (eg …
Learning-based affine registration of histological images
M Wodzinski, H Müller - … : 9th International Workshop, WBIR 2020, Portorož …, 2020 - Springer
The use of different stains for histological sample preparation reveals distinct tissue
properties and may result in a more accurate diagnosis. However, as a result of the staining …
properties and may result in a more accurate diagnosis. However, as a result of the staining …
DeeperHistReg: Robust Whole Slide Images Registration Framework
DeeperHistReg is a software framework dedicated to registering whole slide images (WSIs)
acquired using multiple stains. It allows one to perform the preprocessing, initial alignment …
acquired using multiple stains. It allows one to perform the preprocessing, initial alignment …
Unsupervised learning-based nonrigid registration of high resolution histology images
M Wodzinski, H Müller - Machine Learning in Medical Imaging: 11th …, 2020 - Springer
The use of different dyes during histological sample preparation reveals distinct tissue
properties and may improve the diagnosis. Nonetheless, the staining process deforms the …
properties and may improve the diagnosis. Nonetheless, the staining process deforms the …
Benchmarking of image registration methods for differently stained histological slides
J Borovec, A Munoz-Barrutia… - 2018 25th IEEE …, 2018 - ieeexplore.ieee.org
Image registration is a common task for many biomedical analysis applications. The present
work focuses on the benchmarking of registration methods on differently stained histological …
work focuses on the benchmarking of registration methods on differently stained histological …
Automatic multi-stain registration of whole slide images in histopathology
A Shafique, M Babaie, M Sajadi… - 2021 43rd Annual …, 2021 - ieeexplore.ieee.org
Joint analysis of multiple biomarker images and tissue morphology is important for disease
diagnosis, treatment planning and drug development. It requires cross-staining comparison …
diagnosis, treatment planning and drug development. It requires cross-staining comparison …
Regional registration of whole slide image stacks containing major histological artifacts
M Paknezhad, SYM Loh, Y Choudhury, VKC Koh… - BMC …, 2020 - Springer
Background High resolution 2D whole slide imaging provides rich information about the
tissue structure. This information can be a lot richer if these 2D images can be stacked into a …
tissue structure. This information can be a lot richer if these 2D images can be stacked into a …
Multi-magnification networks for deformable image registration on histopathology images
We present an end-to-end unsupervised deformable registration approach for high-
resolution histopathology images with different stains. Our method comprises two sequential …
resolution histopathology images with different stains. Our method comprises two sequential …