[HTML][HTML] Convergent evolution of rumen microbiomes in high-altitude mammals

Z Zhang, D Xu, LI Wang, J Hao, J Wang, X Zhou… - Current Biology, 2016 - cell.com
Studies of genetic adaptation, a central focus of evolutionary biology, most often focus on the
host's genome and only rarely on its co-evolved microbiome. The Qinghai-Tibetan Plateau …

Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation …

J Kamke, S Kittelmann, P Soni, Y Li, M Tavendale… - Microbiome, 2016 - Springer
Background Enteric fermentation by farmed ruminant animals is a major source of methane
and constitutes the second largest anthropogenic contributor to global warming. Reducing …

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

W Shi, CD Moon, SC Leahy, D Kang, J Froula… - Genome …, 2014 - genome.cshlp.org
Ruminant livestock represent the single largest anthropogenic source of the potent
greenhouse gas methane, which is generated by methanogenic archaea residing in …

Bovine host genome acts on rumen microbiome function linked to methane emissions

M Martínez-Álvaro, MD Auffret, CA Duthie… - Communications …, 2022 - nature.com
Our study provides substantial evidence that the host genome affects the comprehensive
function of the microbiome in the rumen of bovines. Of 1,107/225/1,141 rumen microbial …

The rumen microbial metagenome associated with high methane production in cattle

RJ Wallace, JA Rooke, N McKain, CA Duthie… - BMC genomics, 2015 - Springer
Background Methane represents 16% of total anthropogenic greenhouse gas emissions. It
has been estimated that ruminant livestock produce ca. 29% of this methane. As individual …

Regulation of rumen development in neonatal ruminants through microbial metagenomes and host transcriptomes

N Malmuthuge, G Liang, LL Guan - Genome Biology, 2019 - Springer
Background In ruminants, early rumen development is vital for efficient fermentation that
converts plant materials to human edible food such as milk and meat. Here, we investigate …

An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants

F Xie, W Jin, H Si, Y Yuan, Y Tao, J Liu, X Wang… - Microbiome, 2021 - Springer
Background Gastrointestinal tract (GIT) microbiomes in ruminants play major roles in host
health and thus animal production. However, we lack an integrated understanding of …

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

G Henderson, F Cox, S Ganesh, A Jonker, W Young… - Scientific reports, 2015 - nature.com
Ruminant livestock are important sources of human food and global greenhouse gas
emissions. Feed degradation and methane formation by ruminants rely on metabolic …

Holistic assessment of rumen microbiome dynamics through quantitative metatranscriptomics reveals multifunctional redundancy during key steps of anaerobic feed …

A Söllinger, AT Tveit, M Poulsen, SJ Noel… - …, 2018 - Am Soc Microbiol
Ruminant livestock is a major source of the potent greenhouse gas methane. The complex
rumen microbiome, consisting of bacteria, archaea, and microbial eukaryotes, facilitates …

Gut microbiota adaptation to high altitude in indigenous animals

Y Ma, S Ma, L Chang, H Wang, Q Ga, L Ma… - Biochemical and …, 2019 - Elsevier
Limited is known about role of gut microbiota in the metabolism of high-altitude-living
herbivores, and potential co-evolution between gut microbiome and host genome during …