Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells

EP Mimitou, A Cheng, A Montalbano, S Hao… - Nature …, 2019 - nature.com
Multimodal single-cell assays provide high-resolution snapshots of complex cell
populations, but are mostly limited to transcriptome plus an additional modality. Here, we …

Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing

JM Replogle, TM Norman, A Xu, JA Hussmann… - Nature …, 2020 - nature.com
Single-cell CRISPR screens enable the exploration of mammalian gene function and
genetic regulatory networks. However, use of this technology has been limited by reliance …

Efficient combinatorial targeting of RNA transcripts in single cells with Cas13 RNA Perturb-seq

HH Wessels, A Méndez-Mancilla, Y Hao, E Papalexi… - Nature …, 2023 - nature.com
Pooled CRISPR screens coupled with single-cell RNA-sequencing have enabled systematic
interrogation of gene function and regulatory networks. Here, we introduce Cas13 RNA …

Pooled CRISPR screening with single-cell transcriptome readout

P Datlinger, AF Rendeiro, C Schmidl, T Krausgruber… - Nature …, 2017 - nature.com
CRISPR-based genetic screens are accelerating biological discovery, but current methods
have inherent limitations. Widely used pooled screens are restricted to simple readouts …

Pooled Genome-Scale CRISPR Screens in Single Cells

D Schraivogel, LM Steinmetz… - Annual Review of …, 2023 - annualreviews.org
Assigning functions to genes and learning how to control their expression are part of the
foundation of cell biology and therapeutic development. An efficient and unbiased method to …

Dissecting key regulators of transcriptome kinetics through scalable single-cell RNA profiling of pooled CRISPR screens

Z Xu, A Sziraki, J Lee, W Zhou, J Cao - Nature Biotechnology, 2023 - nature.com
We present a combinatorial indexing method, PerturbSci-Kinetics, for capturing whole
transcriptomes, nascent transcriptomes and single guide RNA (sgRNA) identities across …

Protein barcodes enable high-dimensional single-cell CRISPR screens

A Wroblewska, M Dhainaut, B Ben-Zvi, SA Rose… - Cell, 2018 - cell.com
CRISPR pools are being widely employed to identify gene functions. However, current
technology, which utilizes DNA as barcodes, permits limited phenotyping and bulk-cell …

CRISPR-mediated live imaging of genome editing and transcription

H Wang, M Nakamura, TR Abbott, D Zhao, K Luo, C Yu… - Science, 2019 - science.org
We report a robust, versatile approach called CRISPR live-cell fluorescent in situ
hybridization (LiveFISH) using fluorescent oligonucleotides for genome tracking in a broad …

Cancer CRISPR screens in vivo

RD Chow, S Chen - Trends in cancer, 2018 - cell.com
Clustered regularly interspaced short palindromic repeats (CRISPR) screening is a powerful
toolset for investigating diverse biological processes. Most CRISPR screens to date have …

High-resolution characterization of gene function using single-cell CRISPR tiling screen

L Yang, AKN Chan, K Miyashita, CD Delaney… - Nature …, 2021 - nature.com
Identification of novel functional domains and characterization of detailed regulatory
mechanisms in cancer-driving genes is critical for advanced cancer therapy. To date …