[HTML][HTML] Character-level neural network for biomedical named entity recognition

M Gridach - Journal of biomedical informatics, 2017 - Elsevier
Biomedical named entity recognition (BNER), which extracts important named entities such
as genes and proteins, is a challenging task in automated systems that mine knowledge in …

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text

Q Zhu, X Li, A Conesa, C Pereira - Bioinformatics, 2018 - academic.oup.com
Motivation Best performing named entity recognition (NER) methods for biomedical literature
are based on hand-crafted features or task-specific rules, which are costly to produce and …

[HTML][HTML] Character level and word level embedding with bidirectional LSTM–Dynamic recurrent neural network for biomedical named entity recognition from literature

S Gajendran, D Manjula, V Sugumaran - Journal of Biomedical Informatics, 2020 - Elsevier
Abstract Named Entity Recognition is the process of identifying different entities in a given
context. Biomedical Named Entity Recognition (BNER) is the task of extracting chemical …

[HTML][HTML] Biomedical named entity recognition using deep neural networks with contextual information

H Cho, H Lee - BMC bioinformatics, 2019 - Springer
Background In biomedical text mining, named entity recognition (NER) is an important task
used to extract information from biomedical articles. Previously proposed methods for NER …

[HTML][HTML] Long short-term memory RNN for biomedical named entity recognition

C Lyu, B Chen, Y Ren, D Ji - BMC bioinformatics, 2017 - Springer
Background Biomedical named entity recognition (BNER) is a crucial initial step of
information extraction in biomedical domain. The task is typically modeled as a sequence …

Cross-type biomedical named entity recognition with deep multi-task learning

X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik… - …, 2019 - academic.oup.com
Motivation State-of-the-art biomedical named entity recognition (BioNER) systems often
require handcrafted features specific to each entity type, such as genes, chemicals and …

[HTML][HTML] A neural network multi-task learning approach to biomedical named entity recognition

G Crichton, S Pyysalo, B Chiu, A Korhonen - BMC bioinformatics, 2017 - Springer
Abstract Background Named Entity Recognition (NER) is a key task in biomedical text
mining. Accurate NER systems require task-specific, manually-annotated datasets, which …

Named entity recognition from biomedical texts using a fusion attention-based BiLSTM-CRF

H Wei, M Gao, A Zhou, F Chen, W Qu, C Wang… - IEEE …, 2019 - ieeexplore.ieee.org
Biomedical named entity recognition (BNER) is the basis of biomedical text mining and one
of the core sub-tasks of information extraction. Previous BNER models based on …

Transfer learning for biomedical named entity recognition with neural networks

JM Giorgi, GD Bader - Bioinformatics, 2018 - academic.oup.com
Motivation The explosive increase of biomedical literature has made information extraction
an increasingly important tool for biomedical research. A fundamental task is the recognition …

[HTML][HTML] Gimli: open source and high-performance biomedical name recognition

D Campos, S Matos, JL Oliveira - BMC bioinformatics, 2013 - Springer
Background Automatic recognition of biomedical names is an essential task in biomedical
information extraction, presenting several complex and unsolved challenges. In recent …