[PDF][PDF] Simultaneous profiling of multiple chromatin proteins in the same cells

S Gopalan, Y Wang, NW Harper, M Garber, TG Fazzio - Molecular cell, 2021 - cell.com
Methods derived from CUT&RUN and CUT&Tag enable genome-wide mapping of the
localization of proteins on chromatin from as few as one cell. These and other mapping …

[PDF][PDF] Elucidating combinatorial chromatin states at single-nucleosome resolution

R Sadeh, R Launer-Wachs, H Wandel, A Rahat… - Molecular cell, 2016 - cell.com
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) has been instrumental
to our current view of chromatin structure and function. It allows genome-wide mapping of …

[HTML][HTML] Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag

MP Meers, G Llagas, DH Janssens, CA Codomo… - Nature …, 2023 - nature.com
Chromatin profiling at locus resolution uncovers gene regulatory features that define cell
types and developmental trajectories, but it remains challenging to map and compare …

Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro

B Zhang, A Srivastava, E Mimitou, T Stuart… - Nature …, 2022 - nature.com
Technologies that profile chromatin modifications at single-cell resolution offer enormous
promise for functional genomic characterization, but the sparsity of the measurements and …

Mapping chromatin modifications at the single cell level

CH Ludwig, L Bintu - Development, 2019 - journals.biologists.com
Understanding chromatin regulation holds enormous promise for controlling gene
regulation, predicting cellular identity, and developing diagnostics and cellular therapies …

High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)

DA Bartlett, V Dileep, T Handa, Y Ohkawa… - Journal of Cell …, 2021 - rupress.org
Chromatin profiling in single cells has been extremely challenging and almost exclusively
limited to histone proteins. In cases where single-cell methods have shown promise, many …

Efficient low-cost chromatin profiling with CUT&Tag

HS Kaya-Okur, DH Janssens, JG Henikoff, K Ahmad… - Nature protocols, 2020 - nature.com
Abstract We recently introduced Cleavage Under Targets & Tagmentation (CUT&Tag), an
epigenomic profiling strategy in which antibodies are bound to chromatin proteins in situ in …

[HTML][HTML] Interactive analysis of single-cell epigenomic landscapes with ChromSCape

P Prompsy, P Kirchmeier, J Marsolier… - Nature …, 2020 - nature.com
Chromatin modifications orchestrate the dynamic regulation of gene expression during
development and in disease. Bulk approaches have characterized the wide repertoire of …

[HTML][HTML] Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells

O Ram, A Goren, I Amit, N Shoresh, N Yosef, J Ernst… - Cell, 2011 - cell.com
Hundreds of chromatin regulators (CRs) control chromatin structure and function by
catalyzing and binding histone modifications, yet the rules governing these key processes …

[HTML][HTML] Droplet-based single-cell joint profiling of histone modifications and transcriptomes

Y Xie, C Zhu, Z Wang, M Tastemel, L Chang… - Nature Structural & …, 2023 - nature.com
Abstract We previously reported Paired-Tag, a combinatorial indexing-based method that
can simultaneously map histone modifications and gene expression at single-cell resolution …