PlantRegMap: charting functional regulatory maps in plants

F Tian, DC Yang, YQ Meng, J Jin… - Nucleic acids research, 2020 - academic.oup.com
With the goal of charting plant transcriptional regulatory maps (ie transcription factors (TFs),
cis-elements and interactions between them), we have upgraded the TF-centred database …

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

J Jin, F Tian, DC Yang, YQ Meng, L Kong… - Nucleic acids …, 2016 - academic.oup.com
With the goal of providing a comprehensive, high-quality resource for both plant transcription
factors (TFs) and their regulatory interactions with target genes, we upgraded plant TF …

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

CN Chow, HQ Zheng, NY Wu, CH Chien… - Nucleic acids …, 2016 - academic.oup.com
Transcription factors (TFs) are sequence-specific DNA-binding proteins acting as critical
regulators of gene expression. The Plant P romoter A nalysis N avigator (PlantPAN; …

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

J Jin, H Zhang, L Kong, G Gao, J Luo - Nucleic acids research, 2014 - academic.oup.com
With the aim to provide a resource for functional and evolutionary study of plant transcription
factors (TFs), we updated the plant TF database PlantTFDB to version 3.0 (http://planttfdb …

PlantTFDB: a comprehensive plant transcription factor database

AY Guo, X Chen, G Gao, H Zhang, QH Zhu… - Nucleic Acids …, 2007 - academic.oup.com
Transcription factors (TFs) play key roles in controlling gene expression. Systematic
identification and annotation of TFs, followed by construction of TF databases may serve as …

ConnecTF: A platform to integrate transcription factor–gene interactions and validate regulatory networks

MD Brooks, CL Juang, MS Katari, JM Alvarez… - Plant …, 2021 - academic.oup.com
Deciphering gene regulatory networks (GRNs) is both a promise and challenge of systems
biology. The promise lies in identifying key transcription factors (TFs) that enable an …

PlnTFDB: updated content and new features of the plant transcription factor database

P Pérez-Rodríguez, DM Riano-Pachon… - Nucleic acids …, 2010 - academic.oup.com
ABSTRACT The Plant Transcription Factor Database (PlnTFDB; http://plntfdb. bio. uni-
potsdam. de/v3. 0/) is an integrative database that provides putatively complete sets of …

[HTML][HTML] PlnTFDB: an integrative plant transcription factor database

DM Riaño-Pachón, S Ruzicic, I Dreyer… - BMC …, 2007 - Springer
Abstract Background Transcription factors (TFs) are key regulatory proteins that enhance or
repress the transcriptional rate of their target genes by binding to specific promoter regions …

PlantPAN3. 0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants

CN Chow, TY Lee, YC Hung, GZ Li… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Plant Promoter Analysis Navigator (PlantPAN; http://PlantPAN. itps. ncku. edu.
tw/) is an effective resource for predicting regulatory elements and reconstructing …

[HTML][HTML] iTAK: a program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases

Y Zheng, C Jiao, H Sun, HG Rosli, MA Pombo, P Zhang… - Molecular plant, 2016 - cell.com
Transcription factors (TFs) are proteins that regulate the expression of target genes by
binding to specific cis-elements in promoter regions. Transcriptional regulators (TRs) also …