Tagmentation-based single-cell genomics

AC Adey - Genome Research, 2021 - genome.cshlp.org
It has been just over 10 years since the initial description of transposase-based methods to
prepare high-throughput sequencing libraries, or “tagmentation,” in which a hyperactive …

Single-cell genomics

M Hemberg - Briefings in Functional Genomics, 2018 - academic.oup.com
The continual drop in sequencing costs and the steady improvement of platforms and
protocols have allowed single-cell sequencing to become widely used over the past few …

[HTML][HTML] Single-cell multiomics: multiple measurements from single cells

IC Macaulay, CP Ponting, T Voet - Trends in genetics, 2017 - cell.com
Single-cell sequencing provides information that is not confounded by genotypic or
phenotypic heterogeneity of bulk samples. Sequencing of one molecular type (RNA …

[HTML][HTML] Sample-multiplexing approaches for single-cell sequencing

Y Zhang, S Xu, Z Wen, J Gao, S Li… - Cellular and Molecular …, 2022 - Springer
Single-cell sequencing is widely used in biological and medical studies. However, its
application with multiple samples is hindered by inefficient sample processing, high …

Defining cell types and states with single-cell genomics

C Trapnell - Genome research, 2015 - genome.cshlp.org
A revolution in cellular measurement technology is under way: For the first time, we have the
ability to monitor global gene regulation in thousands of individual cells in a single …

[HTML][HTML] CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells

DH Janssens, DJ Otto, MP Meers, M Setty, K Ahmad… - Genome biology, 2022 - Springer
Abstract Cleavage Under Targets and Tagmentation (CUT&Tag) is an antibody-directed
transposase tethering strategy for in situ chromatin profiling in small samples and single …

[HTML][HTML] Multi-omics of single cells: strategies and applications

C Bock, M Farlik, NC Sheffield - Trends in biotechnology, 2016 - cell.com
Most genome-wide assays provide averages across large numbers of cells, but recent
technological advances promise to overcome this limitation. Pioneering single-cell assays …

[HTML][HTML] Single-cell genomics technology: perspectives

TH Hong, WY Park - Experimental & Molecular Medicine, 2020 - nature.com
In the last decade, molecular and cellular technologies have evolved to give rise to the era
of single-cell genomics, which allows the simultaneous measurement of thousands of genes …

[HTML][HTML] Fully-automated and ultra-fast cell-type identification using specific marker combinations from single-cell transcriptomic data

A Ianevski, AK Giri, T Aittokallio - Nature communications, 2022 - nature.com
Identification of cell populations often relies on manual annotation of cell clusters using
established marker genes. However, the selection of marker genes is a time-consuming …

[HTML][HTML] Cell type discovery and representation in the era of high-content single cell phenotyping

T Bakken, L Cowell, BD Aevermann, M Novotny… - BMC …, 2017 - Springer
Background A fundamental characteristic of multicellular organisms is the specialization of
functional cell types through the process of differentiation. These specialized cell types not …