Cell Population Identification and Benchmarking of Tools in Single-Cell Data Analysis

A Sonrel - 2024 - zora.uzh.ch
In an era of Biology where modern imaging and sequencing technologies allow to study
almost any biological process at molecular levels, it is now possible to study the content …

Cytometry of Single-Cells for Biology and Biomedicine

JF Leary - Essentials of Single-Cell Analysis: Concepts …, 2016 - Springer
Flow and image cytometry are mature single-cell analysis technologies that have been
developed over the past 50 years. Fluorescence has been the primary mode of generating …

Single cell analysis, what is in the future?

LX Garmire, GC Yuan, R Fan, GW Yeo… - … 2019: Proceedings of …, 2018 - World Scientific
Single-cell genomics technology is an exciting emerging area that holds the promise to
revolutionize our understanding of diseases and associated biological processes. It allows …

LotOfCells: data visualization and statistics of single cell metadata

O Gonzalez-Velasco - bioRxiv, 2024 - biorxiv.org
Single-cell sequencing unveils a treasure trove into the biological and molecular
characteristics of samples. Yet, within this flood of data, the challenge to draw meaningful …

CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods

S Su, L Tian, X Dong, PF Hickey, S Freytag… - …, 2020 - academic.oup.com
Motivation Bioinformatic analysis of single-cell gene expression data is a rapidly evolving
field. Hundreds of bespoke methods have been developed in the past few years to deal with …

scPower accelerates and optimizes the design of multi-sample single cell transcriptomic studies

KT Schmid, B Höllbacher, C Cruceanu… - Nature …, 2021 - nature.com
Single cell RNA-seq has revolutionized transcriptomics by providing cell type resolution for
differential gene expression and expression quantitative trait loci (eQTL) analyses. However …

Clustering single cells: a review of approaches on high-and low-depth single-cell RNA-seq data

V Menon - Briefings in functional genomics, 2018 - academic.oup.com
Advances in single-cell RNA-sequencing technology have resulted in a wealth of studies
aiming to identify transcriptomic cell types in various biological systems. There are multiple …

ShIVA: a user-friendly and interactive interface giving biologists control over their single-cell RNA-seq data

R Aussel, M Asif, S Chenag, S Jaeger, P Milpied… - Scientific Reports, 2023 - nature.com
Single-cell technologies have revolutionised biological research and applications. As they
continue to evolve with multi-omics and spatial resolution, analysing single-cell datasets is …

A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification

D Abrams, P Kumar, RKM Karuturi, J George - BMC bioinformatics, 2019 - Springer
Background The advent of single cell RNA sequencing (scRNA-seq) enabled researchers to
study transcriptomic activity within individual cells and identify inherent cell types in the …

Practical Considerations for Single‐Cell Genomics

C Regan, J Preall - Current protocols, 2022 - Wiley Online Library
The single‐cell revolution in the field of genomics is in full bloom, with clever new molecular
biology tricks appearing regularly that allow researchers to explore new modalities or scale …