CRISPR screens identify gene targets at breast cancer risk loci

NK Tuano, J Beesley, M Manning, W Shi… - Genome biology, 2023 - Springer
Background Genome-wide association studies (GWAS) have identified> 200 loci associated
with breast cancer risk. The majority of candidate causal variants are in non-coding regions …

Systematic identification of regulatory variants associated with cancer risk

S Liu, Y Liu, Q Zhang, J Wu, J Liang, S Yu, GH Wei… - Genome biology, 2017 - Springer
Background Most cancer risk-associated single nucleotide polymorphisms (SNPs) identified
by genome-wide association studies (GWAS) are noncoding and it is challenging to assess …

Combinatorial CRISPR/Cas9 screening reveals epistatic networks of interacting tumor suppressor genes and therapeutic targets in human breast cancer

X Zhao, J Li, Z Liu, S Powers - Cancer Research, 2021 - AACR
The majority of cancers are driven by multiple genetic alterations, but how these changes
collaborate during tumorigenesis remains largely unknown. To gain mechanistic insights …

CRISPRi enables isoform-specific loss-of-function screens and identification of gastric cancer-specific isoform dependencies

R Davies, L Liu, S Taotao, N Tuano, R Chaturvedi… - Genome biology, 2021 - Springer
Introduction Genes contain multiple promoters that can drive the expression of various
transcript isoforms. Although transcript isoforms from the same gene could have diverse and …

CRISPR screens provide a comprehensive assessment of cancer vulnerabilities but generate false-positive hits for highly amplified genomic regions

DM Munoz, PJ Cassiani, L Li, E Billy, JM Korn… - Cancer discovery, 2016 - AACR
CRISPR/Cas9 has emerged as a powerful new tool to systematically probe gene function.
We compared the performance of CRISPR to RNAi-based loss-of-function screens for the …

Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes

L Fachal, H Aschard, J Beesley, DR Barnes, J Allen… - Nature …, 2020 - nature.com
Genome-wide association studies have identified breast cancer risk variants in over 150
genomic regions, but the mechanisms underlying risk remain largely unknown. These …

Chromatin interactome mapping at 139 independent breast cancer risk signals

J Beesley, H Sivakumaran, M Moradi Marjaneh… - Genome biology, 2020 - Springer
Background Genome-wide association studies have identified 196 high confidence
independent signals associated with breast cancer susceptibility. Variants within these …

Identification of functional regulatory elements in the human genome using pooled CRISPR screens

SM Borys, ST Younger - BMC genomics, 2020 - Springer
Background Genome-scale pooled CRISPR screens are powerful tools for identifying
genetic dependencies across varied cellular processes. The vast majority of CRISPR …

Functional annotation of breast cancer risk loci: current progress and future directions

S Romualdo Cardoso, A Gillespie, S Haider… - British Journal of …, 2022 - nature.com
Genome-wide association studies coupled with large-scale replication and fine-scale
mapping studies have identified more than 150 genomic regions that are associated with …

CRISPR-Cas13d screens identify KILR, a breast cancer risk-associated lncRNA that regulates DNA replication and repair

L Wang, M Bitar, X Lu, S Jacquelin, S Nair… - Molecular Cancer, 2024 - Springer
Abstract Background Long noncoding RNAs (lncRNAs) have surpassed the number of
protein-coding genes, yet the majority have no known function. We previously discovered …