Scalable functional assays for the interpretation of human genetic variation

D Tabet, V Parikh, P Mali, FP Roth… - Annual Review of …, 2022 - annualreviews.org
Scalable sequence–function studies have enabled the systematic analysis and cataloging of
hundreds of thousands of coding and noncoding genetic variants in the human genome …

[PDF][PDF] Variant interpretation: functional assays to the rescue

LM Starita, N Ahituv, MJ Dunham, JO Kitzman… - The American Journal of …, 2017 - cell.com
Classical genetic approaches for interpreting variants, such as case-control or co-
segregation studies, require finding many individuals with each variant. Because the …

[PDF][PDF] Genomic analysis in the age of human genome sequencing

T Lappalainen, AJ Scott, M Brandt, IM Hall - Cell, 2019 - cell.com
Affordable genome sequencing technologies promise to revolutionize the field of human
genetics by enabling comprehensive studies that interrogate all classes of genome …

[HTML][HTML] High‐throughput assays to assess the functional impact of genetic variants: A road towards genomic‐driven medicine

J Ipe, M Swart, KS Burgess… - Clinical and Translational …, 2017 - ncbi.nlm.nih.gov
Genome-wide genotyping and DNA sequencing has led to the identification of large
numbers of genetic variants that are associated with many clinical phenotypes. The …

Inferring causality and functional significance of human coding DNA variants

SR Sunyaev - Human molecular genetics, 2012 - academic.oup.com
Sequencing technology enables the complete characterization of human genetic variation.
Statistical genetics studies identify numerous loci linked to or associated with phenotypes of …

Multiplexed assays of variant effects contribute to a growing genotype–phenotype atlas

J Weile, FP Roth - Human genetics, 2018 - Springer
Given the constantly improving cost and speed of genome sequencing, it is reasonable to
expect that personal genomes will soon be known for many millions of humans. This stands …

Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation

H Gelman, JN Dines, J Berg, AH Berger, S Brnich… - Genome Medicine, 2019 - Springer
Variants of uncertain significance represent a massive challenge to medical genetics.
Multiplexed functional assays, in which the functional effects of thousands of genomic …

From variant to function in human disease genetics

T Lappalainen, DG MacArthur - Science, 2021 - science.org
Over the next decade, the primary challenge in human genetics will be to understand the
biological mechanisms by which genetic variants influence phenotypes, including disease …

The power of multiplexed functional analysis of genetic variants

M Gasperini, L Starita, J Shendure - Nature protocols, 2016 - nature.com
New technologies have recently enabled saturation mutagenesis and functional analysis of
nearly all possible variants of regulatory elements or proteins of interest in single …

An Atlas of Variant Effects to understand the genome at nucleotide resolution

DM Fowler, DJ Adams, AL Gloyn, WC Hahn, DS Marks… - Genome Biology, 2023 - Springer
Sequencing has revealed hundreds of millions of human genetic variants, and continued
efforts will only add to this variant avalanche. Insufficient information exists to interpret the …