[HTML][HTML] TrackMate: An open and extensible platform for single-particle tracking

JY Tinevez, N Perry, J Schindelin, GM Hoopes… - Methods, 2017 - Elsevier
We present TrackMate, an open source Fiji plugin for the automated, semi-automated, and
manual tracking of single-particles. It offers a versatile and modular solution that works out of …

Tracking single particles: a user-friendly quantitative evaluation

BC Carter, GT Shubeita, SP Gross - Physical biology, 2005 - iopscience.iop.org
As our knowledge of biological processes advances, we are increasingly aware that cells
actively position sub-cellular organelles and other constituents to control a wide range of …

Single-particle tracking: connecting the dots

MJ Saxton - Nature methods, 2008 - nature.com
Single-particle tracking: connecting the dots | Nature Methods Skip to main content Thank you
for visiting nature.com. You are using a browser version with limited support for CSS. To obtain …

[HTML][HTML] Objective comparison of particle tracking methods

N Chenouard, I Smal, F De Chaumont, M Maška… - Nature …, 2014 - nature.com
Particle tracking is of key importance for quantitative analysis of intracellular dynamic
processes from time-lapse microscopy image data. Because manually detecting and …

Bringing TrackMate into the era of machine-learning and deep-learning

D Ershov, MS Phan, JW Pylvänäinen, SU Rigaud… - BioRxiv, 2021 - biorxiv.org
TrackMate is an automated tracking software used to analyze bioimages and distributed as
a Fiji plugin. Here we introduce a new version of TrackMate rewritten to improve …

Particle filtering for multiple object tracking in dynamic fluorescence microscopy images: Application to microtubule growth analysis

I Smal, K Draegestein, N Galjart… - IEEE transactions on …, 2008 - ieeexplore.ieee.org
Quantitative analysis of dynamic processes in living cells by means of fluorescence
microscopy imaging requires tracking of hundreds of bright spots in noisy image sequences …

Fast, bias-free algorithm for tracking single particles with variable size and shape

AJ Berglund, MD McMahon, JJ McClelland… - Optics express, 2008 - opg.optica.org
We introduce a fast and robust technique for single-particle tracking with nanometer
accuracy. We extract the center-of-mass of the image of a single particle with a simple …

Accurate detection and complete tracking of large populations of features in three dimensions

Y Gao, ML Kilfoil - Optics express, 2009 - opg.optica.org
Localization and tracking of colloidal particles in microscopy images generates the raw data
necessary to understand both the dynamics and the mechanical properties of colloidal …

[PDF][PDF] Non-bias-limited tracking of spherical particles, enabling nanometer resolution at low magnification

MTJ van Loenhout, JWJ Kerssemakers, I De Vlaminck… - Biophysical journal, 2012 - cell.com
We present a three-dimensional tracking routine for nondiffraction-limited particles, which
significantly reduces pixel bias. Our technique allows for increased resolution compared to …

[PDF][PDF] Quantitative comparison of algorithms for tracking single fluorescent particles

MK Cheezum, WF Walker, WH Guilford - Biophysical journal, 2001 - cell.com
Single particle tracking has seen numerous applications in biophysics, ranging from the
diffusion of proteins in cell membranes to the movement of molecular motors. A plethora of …