Bridging biological cfDNA features and machine learning approaches

T Moser, S Kühberger, I Lazzeri, G Vlachos, E Heitzer - Trends in Genetics, 2023 - cell.com
Liquid biopsies (LBs), particularly using circulating tumor DNA (ctDNA), are expected to
revolutionize precision oncology and blood-based cancer screening. Recent technological …

Liquid biopsies beyond mutation calling: genomic and epigenomic features of cell-free DNA in cancer

AK Angeles, F Janke, S Bauer, P Christopoulos… - Cancers, 2021 - mdpi.com
Simple Summary Liquid biopsies provide a non-invasive means to diagnose and profile
tumors when tissue is not available. Sequence-based analysis of cell-free DNA (cfDNA) is …

Toward the early detection of cancer by decoding the epigenetic and environmental fingerprints of cell-free DNA

Y Van Der Pol, F Mouliere - Cancer cell, 2019 - cell.com
Widespread adaptation of liquid biopsy for the early detection of cancer has yet to reach
clinical utility. Circulating tumor DNA is commonly detected though the presence of genetic …

Next-generation liquid biopsies: embracing data science in oncology

YR Im, DWY Tsui, LA Diaz, JCM Wan - Trends in cancer, 2021 - cell.com
Deeper and broader sequencing of circulating tumor DNA (ctDNA) has identified a wealth of
cancer markers in the circulation, resulting in a paradigm shift towards data science-driven …

Bioinformatics analysis for circulating cell-free DNA in cancer

CC Huang, M Du, L Wang - Cancers, 2019 - mdpi.com
Molecular analysis of cell-free DNA (cfDNA) that circulates in plasma and other body fluids
represents a “liquid biopsy” approach for non-invasive cancer screening or monitoring. The …

Liquid biopsy of methylation biomarkers in cell-free DNA

H Luo, W Wei, Z Ye, J Zheng, R Xu - Trends in molecular medicine, 2021 - cell.com
Liquid biopsies, in particular, analysis of cell-free DNA (cfDNA), have emerged as a
promising noninvasive diagnostic approach in oncology. Abnormal distribution of DNA …

Towards precision medicine: advances in 5-hydroxymethylcytosine cancer biomarker discovery in liquid biopsy

C Zeng, EK Stroup, Z Zhang, BCH Chiu… - Cancer …, 2019 - Springer
Robust and clinically convenient biomarkers for cancer diagnosis, early detection, and
prognosis have great potential to improve patient survival and are the key to precision …

[HTML][HTML] The dawn of the liquid biopsy in the fight against cancer

IG Domínguez-Vigil, AK Moreno-Martínez, JY Wang… - Oncotarget, 2018 - ncbi.nlm.nih.gov
Cancer is a molecular disease associated with alterations in the genome, which, thanks to
the highly improved sensitivity of mutation detection techniques, can be identified in cell-free …

Refined characterization of circulating tumor DNA through biological feature integration

H Markus, D Chandrananda, E Moore, F Mouliere… - Scientific reports, 2022 - nature.com
Circulating tumor DNA (ctDNA) in blood plasma is present at very low concentrations
compared to cell-free DNA (cfDNA) of non-tumor origin. To enhance ctDNA detection, recent …

[HTML][HTML] Incorporating blood-based liquid biopsy information into cancer staging: time for a TNMB system?

M Yang, ME Forbes, RL Bitting, SS O'Neill, PC Chou… - Annals of …, 2018 - Elsevier
Tissue biopsy is the standard diagnostic procedure for cancer. Biopsy may also provide
material for genotyping, which can assist in the diagnosis and selection of targeted therapies …